Prediction of subcellular locations of proteins: where to proceed? (Q37809826)

23 August 2017

Prediction of subcellular locations of proteins: where to proceed? (English)

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23 August 2017

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author name string

Kenta Nakai

series ordinal

2

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23 August 2017

2 November 2010

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23 August 2017

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23 August 2017

10

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23 August 2017

22

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23 August 2017

3970-3983

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Predicting proteomes of mitochondria and related organelles from genomic and expressed sequence tag data

23 August 2017

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The prediction of protein subcellular localization from sequence: a shortcut to functional genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Recent progress in protein subcellular location prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Methods for predicting bacterial protein subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

A new method for predicting signal sequence cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

A simple method for displaying the hydropathic character of a protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Expert system for predicting protein localization sites in gram-negative bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

A knowledge base for predicting protein localization sites in eukaryotic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The membrane proteins encoded by yeast chromosome III genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Relation between amino acid composition and cellular location of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Mimicking cellular sorting improves prediction of subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

BaCelLo: a balanced subcellular localization predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Protein subcellular localization prediction of eukaryotes using a knowledge-based approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Going from where to why--interpretable prediction of protein subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Prediction of protein subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Adaptation of protein surfaces to subcellular location

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

PROSITE, a protein domain database for functional characterization and annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Predicting subcellular localization of proteins using machine-learned classifiers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Improving subcellular localization prediction using text classification and the gene ontology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Signal sequences. The limits of variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Discovery of functional motifs in h-regions of trypanosome signal sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The COOH-terminal ends of internal signal and signal-anchor sequences are positioned differently in the ER translocase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Architecture, function and prediction of long signal peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The signal peptide of the mouse mammary tumor virus Rem protein is released from the endoplasmic reticulum membrane and accumulates in nucleoli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Improved prediction of signal peptides: SignalP 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Classical nuclear localization signals: definition, function, and interaction with importin alpha

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Six classes of nuclear localization signals specific to different binding grooves of importin alpha

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Expanding the definition of the classical bipartite nuclear localization signal

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Rules for nuclear localization sequence recognition by karyopherin beta 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Finding nuclear localization signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

NucPred--predicting nuclear localization of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The HIV-1 Rev activation domain is a nuclear export signal that accesses an export pathway used by specific cellular RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Protein sequence requirements for function of the human T-cell leukemia virus type 1 Rex nuclear export signal delineated by a novel in vivo randomization-selection assay

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Analysis and prediction of leucine-rich nuclear export signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Nuclear export signal consensus sequences defined using a localization-based yeast selection system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Structural basis for leucine-rich nuclear export signal recognition by CRM1

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Translocation of proteins into mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Peptide Library Approach with a Disulfide Tether to Refine the Tom20 Recognition Motif in Mitochondrial Presequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Analysis and prediction of mitochondrial targeting signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Mitochondrial processing peptidases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Computational method to predict mitochondrially imported proteins and their targeting sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Machinery for protein sorting and assembly in the mitochondrial outer membrane

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Evolutionary conservation of biogenesis of beta-barrel membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Solution Structure of the Integral Human Membrane Protein VDAC-1 in Detergent Micelles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Structure of the human voltage-dependent anion channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The versatile beta-barrel membrane protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Targeting of nucleus-encoded proteins to chloroplasts in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Chloroplast transit peptides: structure, function and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Interaction of plant mitochondrial and chloroplast signal peptides with the Hsp70 molecular chaperone

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Arabidopsis nuclear-encoded plastid transit peptides contain multiple sequence subgroups with distinctive chloroplast-targeting sequence motifs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Sorting signals, N-terminal modifications and abundance of the chloroplast proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Protein transport in organelles: Dual targeting of proteins to mitochondria and chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Dual targeting to mitochondria and chloroplasts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Peroxisome targeting signal 1: is it really a simple tripeptide?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

How proteins penetrate peroxisomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

A new definition for the consensus sequence of the peroxisome targeting signal type 2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Targeting signals in peroxisomal membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Peroxisomal membrane proteins contain common Pex19p-binding sites that are an integral part of their targeting signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Function of the PEX19-binding site of human adrenoleukodystrophy protein as targeting motif in man and yeast. PMP targeting is evolutionarily conserved.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Lpx1p is a peroxisomal lipase required for normal peroxisome morphology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Hitchhiking of Cu/Zn superoxide dismutase to peroxisomes--evidence for a natural piggyback import mechanism in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Signals for COPII-dependent export from the ER: what's the ticket out?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Mechanisms of endoplasmic-reticulum export of glycine transporter-1 (GLYT1).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

A novel endoplasmic reticulum export signal: proline at the +2-position from the signal peptide cleavage site

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

A single conserved leucine residue on the first intracellular loop regulates ER export of G protein-coupled receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Quality control in the endoplasmic reticulum

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Sorting of lysosomal proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Transmembrane protein topology prediction using support vector machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Control of membrane protein topology by a single C-terminal residue

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

To flip or not to flip: lipid-protein charge interactions are a determinant of final membrane protein topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Protein translocation across the bacterial cytoplasmic membrane.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The importance of the twin-arginine translocation pathway for bacterial virulence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Prediction of twin-arginine signal peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Mechanisms of protein export across the bacterial outer membrane

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The type VI secretion toolkit

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The type VI secretion system: translocation of effectors and effector-domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Sequence-based prediction of type III secreted proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

SOSUI-GramN: high performance prediction for sub-cellular localization of proteins in gram-negative bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Assembly factor Omp85 recognizes its outer membrane protein substrates by a species-specific C-terminal motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Signals in bacterial beta-barrel proteins are functional in eukaryotic cells for targeting to and assembly in mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The mitochondrial porin, VDAC, has retained the ability to be assembled in the bacterial outer membrane

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Wza the translocon for E. coli capsular polysaccharides defines a new class of membrane protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Structure of the outer membrane complex of a type IV secretion system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Subcellular localization of the yeast proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Global analysis of protein localization in budding yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Proteomic characterization of the human centrosome by protein correlation profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

The Universal Protein Resource (UniProt) in 2010

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

WoLF PSORT: protein localization predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

PSLpred: prediction of subcellular localization of bacterial proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Dissecting membrane insertion of mitochondrial beta-barrel proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

Mitochondrial beta-barrel proteins, an exclusive club?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000274

21 January 2018

Identifiers

DOI

10.1002/PMIC.201000274

1 reference

23 August 2017

1 reference

PubMed ID

21080490