Heterogeneous evolutionary processes affect R gene diversity in natural populations of Solanum pimpinellifolium (Q37714043)

22 August 2017

Heterogeneous evolutionary processes affect R gene diversity in natural populations of Solanum pimpinellifolium (English)

1 reference

22 August 2017

Solanum pimpinellifolium

object named as

Solanum pimpinellifolium

1 reference

1 reference

2

Barbara A Schaal

1 reference

22 August 2017

Ana L Caicedo

1

1 reference

PMCID

536038

22 August 2017

language of work or name

English

0 references

publication date

6 December 2004

1 reference

Proceedings of the National Academy of Sciences of the United States of America

22 August 2017

1 reference

22 August 2017

101

1 reference

22 August 2017

50

1 reference

22 August 2017

17444-17449

1 reference

Population structure and phylogeography of Solanum pimpinellifolium inferred from a nuclear gene

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

PLANT DISEASE RESISTANCE GENES

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Evolutionary dynamics of an Arabidopsis insect resistance quantitative trait locus.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Natural selection for polymorphism in the disease resistance gene Rps2 of Arabidopsis thaliana.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Molecular population genetics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

The leucine-rich repeat as a protein recognition motif

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Evolutionary dynamics of plant R-genes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

TCS: a computer program to estimate gene genealogies

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

The generation of plant disease resistance gene specificities.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Codon-substitution models for heterogeneous selection pressure at amino acid sites

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Genomic approaches to plant disease resistance

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

PAML: a program package for phylogenetic analysis by maximum likelihood

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Evolution by the birth-and-death process in multigene families of the vertebrate immune system

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

The coalescent process in models with selection and recombination

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Ancient diversification of the Pto kinase family preceded speciation in Solanum

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Characterization of the tomato Cf-4 gene for resistance to Cladosporium fulvum identifies sequences that determine recognitional specificity in Cf-4 and Cf-9.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Exploiting the past and the future in protein secondary structure prediction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Domain swapping and gene shuffling identify sequences required for induction of an Avr-dependent hypersensitive response by the tomato Cf-4 and Cf-9 proteins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-for-gene specificity.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

RPP13 is a simple locus in Arabidopsis thaliana for alleles that specify downy mildew resistance to different avirulence determinants in Peronospora parasitica.

23 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

The tomato Cf-5 disease resistance gene and six homologs show pronounced allelic variation in leucine-rich repeat copy number.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

The C-terminal dilysine motif for targeting to the endoplasmic reticulum is not required for Cf-9 function

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

Variable leucine-rich repeats of tomato disease resistance genes Cf-2 and Cf-5 determine specificity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=536038

A sharper Bonferroni procedure for multiple tests of significance

1 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407899101

Mode of amplification and reorganization of resistance genes during recent Arabidopsis thaliana evolution

21 January 2018

1 reference

12 December 2020

Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes

1 reference

12 December 2020

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

1 reference

12 December 2020

Functional, c-myc-tagged Cf-9 resistance gene products are plasma-membrane localized and glycosylated

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0407899101

1 reference

22 August 2017

0 references

1 reference

22 August 2017

1 reference

PMCID

536038