Developmental gene regulation in the era of genomics (Q37666209)

21 August 2017

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title

Developmental gene regulation in the era of genomics (English)

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21 August 2017

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2

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21 August 2017

1

Julia Zeitlinger

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PubMed ID

20045679

21 August 2017

language of work or name

English

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publication date

4 January 2010

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21 August 2017

Developmental Biology

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21 August 2017

339

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21 August 2017

2

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21 August 2017

230-239

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GAGA protein: a multi-faceted transcription factor

21 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Network motifs: theory and experimental approaches

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Gene expression during the life cycle of Drosophila melanogaster.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Protein kinases as drug targets in cancer.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Gene ontology: tool for the unification of biology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Master regulatory genes; telling them what to do.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Ultraconserved Elements in the Human Genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Global nucleosome occupancy in yeast

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Nucleosomes unfold completely at a transcriptionally active promoter.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Removal of promoter nucleosomes by disassembly rather than sliding in vivo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

cis-Regulatory networks during development: a view of Drosophila.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Polycomb complexes repress developmental regulators in murine embryonic stem cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

High-resolution mapping and characterization of open chromatin across the genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Signal Transduction and the Control of Gene Expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Toward a systems-level understanding of developmental regulatory networks

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Using FlyAtlas to identify better Drosophila melanogaster models of human disease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Switching of the core transcription machinery during myogenesis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Polycomb silencing blocks transcription initiation.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

The identification and functional characterisation of conserved regulatory elements in developmental genes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Signaling pathways in cancer and embryonic stem cells

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Genomic regulatory blocks underlie extensive microsynteny conservation in insects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

MicroRNA targets in Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

In situ activation pattern of Drosophila EGF receptor pathway during development.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Ultraconserved elements in insect genomes: a highly conserved intronic sequence implicated in the control of homothorax mRNA splicing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

A chromatin landmark and transcription initiation at most promoters in human cells

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Histone modifications at human enhancers reflect global cell-type-specific gene expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Promoter elements associated with RNA Pol II stalling in the Drosophila embryo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Nucleosome destabilization in the epigenetic regulation of gene expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Shaping segments: Hox gene function in the genomic age.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Embryonic expression patterns of the Drosophila decapentaplegic gene: separate regulatory elements control blastoderm expression and lateral ectodermal expression.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Embryonic enhancers in the dpp disk region regulate a second round of Dpp signaling from the dorsal ectoderm to the mesoderm that represses Zfh-1 expression in a subset of pericardial cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

The RNA polymerase II core promoter - the gateway to transcription.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Evolutionary forces act on promoter length: identification of enriched cis-regulatory elements.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Hox genes in vertebrate development

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

DNA sequence requirements for generating paused polymerase at the start of hsp70

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Evidence for nucleosome depletion at active regulatory regions genome-wide

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Control of developmental regulators by Polycomb in human embryonic stem cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

GAGA factor and the TFIID complex collaborate in generating an open chromatin structure at the Drosophila melanogaster hsp26 promoter

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

A systems view of Drosophila segmentation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Reprogramming somatic cells towards pluripotency by defined factors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Homotypic regulatory clusters in Drosophila.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Imaging Drosophila gene activation and polymerase pausing in vivo

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Biological function of unannotated transcription during the early development of Drosophila melanogaster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Signaling meets chromatin during tissue regeneration in Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Nucleosome organization in the Drosophila genome.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Homeotic genes of Drosophila.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

RNA polymerase is poised for activation across the genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

The regulatory content of intergenic DNA shapes genome architecture

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

MyoD family: a paradigm for development?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Controlling the elongation phase of transcription with P-TEFb

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Genome-wide map of nucleosome acetylation and methylation in yeast

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Polycomb comes of age: genome-wide profiling of target sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Breaking barriers to transcription elongation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Molecular genetics of axis formation in zebrafish

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Dynamic regulation of nucleosome positioning in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Polycomb silencing mechanisms and the management of genomic programmes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Polycomb complexes and epigenetic states

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Genome-wide analysis of Polycomb targets in Drosophila melanogaster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

The decapentaplegic core promoter region plays an integral role in the spatial control of transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

HSF access to heat shock elements in vivo depends critically on promoter architecture defined by GAGA factor, TFIID, and RNA polymerase II binding sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Regulation of even-skipped stripe 2 in the Drosophila embryo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Coordination of PIC Assembly and Chromatin Remodeling During Differentiation-Induced Gene Activation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Decapentaplegic: a gene complex affecting morphogenesis in Drosophila melanogaster.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Suz12 binds to silenced regions of the genome in a cell-type-specific manner

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Molecular organization of the decapentaplegic gene in Drosophila melanogaster.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

GONOME: measuring correlations between GO terms and genomic positions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Global analysis of patterns of gene expression during Drosophila embryogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA binding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Drosophila models for cancer research.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Identification in vivo of different rate-limiting steps associated with transcriptional activators in the presence and absence of a GAGA element

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Transcription elongation controls cell fate specification in the Drosophila embryo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Do we understand development?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Epithelial-mesenchymal transition: at the crossroads of development and tumor metastasis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

Genome-scale identification of nucleosome positions in S. cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.12.039

10.1016/J.YDBIO.2009.12.039

7 January 2021

Identifiers

DOI

1 reference

21 August 2017

1 reference

PubMed ID

20045679