Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo (Q37664924)

21 August 2017

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo (English)

1 reference

21 August 2017

4

Manolis Kellis

1 reference

21 August 2017

5

Jonathan S Weissman

1 reference

21 August 2017

Silvi Rouskin

1

1 reference

21 August 2017

Meghan Zubradt

series ordinal

2

1 reference

21 August 2017

Stefan Washietl

series ordinal

3

1 reference

21 August 2017

language of work or name

English

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publication date

15 December 2013

1 reference

21 August 2017

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21 August 2017

505

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21 August 2017

701-705

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21 August 2017

7485

1 reference

https://scigraph.springernature.com/pub.10.1038/nature12894

21 August 2017

0 references

cites work

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Eukaryotic TPP riboswitch regulation of alternative splicing involving long-distance base pairing

23 August 2017

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Control of somatic tissue differentiation by the long non-coding RNA TINCR.

23 August 2017

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A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress

23 August 2017

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23 August 2017

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Genome-wide measurement of RNA folding energies

23 August 2017

1 reference

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Quantitative dimethyl sulfate mapping for automated RNA secondary structure inference

23 August 2017

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The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

23 August 2017

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Tiling genomes of pathogenic viruses identifies potent antiviral shRNAs and reveals a role for secondary structure in shRNA efficacy

23 August 2017

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The structure of the eukaryotic ribosome at 3.0 Å resolution

23 August 2017

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Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

23 August 2017

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Translation on demand by a simple RNA-based thermosensor

23 August 2017

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FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

23 August 2017

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Genome-wide measurement of RNA secondary structure in yeast

23 August 2017

1 reference

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Initial community evenness favours functionality under selective stress

23 August 2017

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

23 August 2017

1 reference

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Accurate SHAPE-directed RNA structure determination

23 August 2017

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RNAalifold: improved consensus structure prediction for RNA alignments

23 August 2017

1 reference

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The transcriptional landscape of the yeast genome defined by RNA sequencing

23 August 2017

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The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures

23 August 2017

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Fast and reliable prediction of noncoding RNAs

23 August 2017

1 reference

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Targeted mRNA degradation by deadenylation-independent decapping.

23 August 2017

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Optimized cassettes for fluorescent protein tagging in Saccharomyces cerevisiae

23 August 2017

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Aligning multiple genomic sequences with the threaded blockset aligner

23 August 2017

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23 August 2017

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Block of HAC1 mRNA translation by long-range base pairing is released by cytoplasmic splicing upon induction of the unfolded protein response

23 August 2017

1 reference

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Structural diversity of self-cleaving ribozymes

23 August 2017

1 reference

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Mechanism of non-spliceosomal mRNA splicing in the unfolded protein response pathway

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966492

Exportin 1 (Crm1p) is an essential nuclear export factor

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966492

RNA chaperones and the RNA folding problem

23 August 2017

1 reference

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Analysis of the structure of Tetrahymena nuclear RNAs in vivo: telomerase RNA, the self-splicing rRNA intron, and U2 snRNA.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966492

The interpretation of protein structures: Estimation of static accessibility

23 August 2017

1 reference

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Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: a technique for RNA structure analysis using chemical probes and reverse transcriptase

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966492

Use of dimethyl sulfate to probe RNA structure in vivo

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966492

RNAz 2.0: improved noncoding RNA detection.

6 September 2017

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Probing RNA structure with chemical reagents and enzymes

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966492

RNA SHAPE analysis in living cells

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966492

Global analysis of RNA secondary structure in two metazoans.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966492

Deciphering 3'ss selection in the yeast genome reveals an RNA thermosensor that mediates alternative splicing

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966492

Structural elements required for the localization of ASH1 mRNA and of a green fluorescent protein reporter particle in vivo

1 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24336214

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Low Moments for Small Samples: A Comparative Study of Order Statistics

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE12894

inferred from DOI database lookup

7 January 2021

based on heuristic

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12894

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE12894

1 reference

Dimensions Publication ID

21 August 2017

0 references

1 reference

21 August 2017

1 reference