Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals (Q37528693)

From Wikidata

Jump to navigation Jump to search

scientific article published on 02 September 2013

Language	Label	Description	Also known as
English	Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals	scientific article published on 02 September 2013

Statements

scholarly article

1 reference

Europe PubMed Central

20 August 2017

Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals (English)

1 reference

Europe PubMed Central

20 August 2017

1 reference

based on heuristic

inferred from title

author name string

Shan Xiao

1

1 reference

Europe PubMed Central

20 August 2017

Jia-Yu Zhang

2

1 reference

Europe PubMed Central

20 August 2017

Ke-Wei Zheng

3

1 reference

Europe PubMed Central

20 August 2017

Yu-Hua Hao

4

1 reference

Europe PubMed Central

20 August 2017

Zheng Tan

5

1 reference

Europe PubMed Central

20 August 2017

language of work or name

0 references

publication date

2 September 2013

1 reference

Europe PubMed Central

20 August 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

20 August 2017

41

1 reference

Europe PubMed Central

20 August 2017

22

1 reference

Europe PubMed Central

20 August 2017

10379-10390

1 reference

Europe PubMed Central

20 August 2017

copyright license

Creative Commons Attribution 3.0 Unported

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Co-transcriptional formation of DNA:RNA hybrid G-quadruplex and potential function as constitutional cis element for transcription control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Quantitative visualization of DNA G-quadruplex structures in human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Bisquinolinium compounds induce quadruplex-specific transcriptome changes in HeLa S3 cell lines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

5'-UTR RNA G-quadruplexes: translation regulation and targeting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Transcription as a source of genome instability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

R-loop-mediated genomic instability is caused by impairment of replication fork progression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

DNA secondary structures and epigenetic determinants of cancer genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

G-quadruplex formation at the 3' end of telomere DNA inhibits its extension by telomerase, polymerase and unwinding by helicase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

G4 motifs correlate with promoter-proximal transcriptional pausing in human genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Mapping the sequences of potential guanine quadruplex motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Structure, location and interactions of G-quadruplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Making sense of G-quadruplex and i-motif functions in oncogene promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Mechanisms and implications of transcription blockage by guanine-rich DNA sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Human telomeric G-quadruplex: the current status of telomeric G-quadruplexes as therapeutic targets in human cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Molecular crowding creates an essential environment for the formation of stable G-quadruplexes in long double-stranded DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Genome-wide colonization of gene regulatory elements by G4 DNA motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

G-quadruplex structures: in vivo evidence and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

CpG islands--'a rough guide'.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Mechanism and regulation of class switch recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Cotranscriptional processes and their influence on genome stability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Pause sites promote transcriptional termination of mammalian RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Prevalence of quadruplexes in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Highly prevalent putative quadruplex sequence motifs in human DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Cell senescence and telomere shortening induced by a new series of specific G-quadruplex DNA ligands.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Determination of the RNA binding specificity of the heterogeneous nuclear ribonucleoprotein (hnRNP) H/H'/F/2H9 family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Inhibition of telomerase by G-quartet DNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Sequence requirements for premature transcription arrest within the first intron of the mouse c-fos gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

23 August 2017

Discovery of novel rules for G-quadruplex-forming sequences in plants by using bioinformatics methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

6 September 2017

Guanine repeat-containing sequences confer transcription-dependent instability in an orientation-specific manner in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

6 September 2017

G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

6 September 2017

MAZ-dependent termination between closely spaced human complement genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

6 September 2017

G4-forming sequences in the non-transcribed DNA strand pose blocks to T7 RNA polymerase and mammalian RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

14 September 2017

Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

14 September 2017

Senescence and telomere shortening induced by novel potent G-quadruplex interactive agents, quindoline derivatives, in human cancer cell lines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

14 September 2017

A G-quadruplex telomere targeting agent produces p16-associated senescence and chromosomal fusions in human prostate cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

14 September 2017

Initiation of mitochondrial DNA replication by transcription and R-loop processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

28 September 2017

G-quadruplex-binding benzo[a]phenoxazines down-regulate c-KIT expression in human gastric carcinoma cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

25 June 2018

Turning off transcription of the bcl-2 gene by stabilizing the bcl-2 promoter quadruplex with quindoline derivatives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

25 June 2018

G-quadruplex preferentially forms at the very 3' end of vertebrate telomeric DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

25 June 2018

G-quadruplexes in promoters throughout the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

25 June 2018

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

25 June 2018

QGRS-H Predictor: a web server for predicting homologous quadruplex forming G-rich sequence motifs in nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

2 September 2018

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

2 September 2018

Inducement of G-quadruplex DNA forming and down-regulation of oncogene c-myc by bile acid-amino acid conjugate-BAA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

2 September 2018

G-quadruplexes: the beginning and end of UTRs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

2 September 2018

Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

2 September 2018

Bioinformatics approaches to quadruplex sequence location

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905843

2 September 2018

Effect of DNA secondary structure on human telomerase activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enrichment of G4 DNA motif in transcriptional regulatory region of chicken genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extensive selection for the enrichment of G4 DNA motifs in transcriptional regulatory regions of warm blooded animals

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of length variations at nucleotide positions 303-315 in human mitochondrial DNA on transcription termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Up-regulating relaxin expression by G-quadruplex interactive ligand to achieve antifibrotic action

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

G-quadruplex hinders translocation of BLM helicase on DNA: a real-time fluorescence spectroscopic unwinding study and comparison with duplex substrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Formation, recognition and bioactivities of a novel G-quadruplex in the STAT3 gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The influence of transcriptional orientation on endogenous switch region function

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A mechanism of formation of a persistent hybrid between elongating RNA and template DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/23999096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKT781

1 reference

Europe PubMed Central

20 August 2017

1 reference

Europe PubMed Central

20 August 2017

1 reference

Europe PubMed Central

20 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q37528693&oldid=1864081387"