DNA dynamically directs its own transcription initiation (Q37519218)

20 August 2017

DNA dynamically directs its own transcription initiation (English)

1 reference

20 August 2017

5

Alan R Bishop

1 reference

20 August 2017

3

Kim O Rasmussen

1 reference

20 August 2017

Chu H Choi

1

1 reference

20 August 2017

George Kalosakas

series ordinal

2

1 reference

20 August 2017

Makoto Hiromura

series ordinal

4

1 reference

20 August 2017

Anny Usheva

series ordinal

6

1 reference

20 August 2017

language of work or name

English

0 references

publication date

5 March 2004

1 reference

20 August 2017

Nucleic Acids Research

1 reference

20 August 2017

32

1 reference

20 August 2017

4

1 reference

20 August 2017

1584-1590

1 reference

Localization of denaturation bubbles in random DNA sequences

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

The biology of eukaryotic promoter prediction--a review

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

YY1 transcriptional initiator: protein interactions and association with a DNA site containing unpaired strands

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Crystal structure of a yeast TBP/TATA-box complex

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Sequence dependence of hydrogen exchange kinetics in DNA duplexes at the individual base pair level in solution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Genetic analysis of adeno-associated virus: properties of deletion mutants constructed in vitro and evidence for an adeno-associated virus replication function

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Predicting DNA duplex stability from the base sequence

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Positive and negative autoregulation of the adeno-associated virus type 2 genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Sequence of general transcription factor TFIIB and relationships to other initiation factors

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

A structural model of transcription elongation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Sequence-dependent dynamics of TATA-Box binding sites

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

DNA binding sites for the transcriptional activator/repressor YY1.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Adenovirus promoters and E1A transactivation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

DNA opens up--supercoiling and heavy breathing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

NMR studies of conformational states and dynamics of DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Specificity of the S1 nuclease from Aspergillus oryzae

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Sequence-dependent DNA structure: tetranucleotide conformational maps

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Nucleic acid base pair dynamics: the impact of sequence and structure using free-energy calculations.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

Sequence-dependent elastic properties of DNA.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390311

High base pair opening rates in tracts of GC base pairs

2 September 2018

1 reference

12 December 2020

Statistical mechanics of a nonlinear model for DNA denaturation

1 reference

12 December 2020

A detailed interpretation of OH radical footprints in a TBP-DNA complex reveals the role of dynamics in the mechanism of sequence-specific binding

1 reference

12 December 2020

Computer simulation of DNA double-helix dynamics

1 reference

12 December 2020

Duplex destabilization in superhelical DNA is predicted to occur at specific transcriptional regulatory regions

1 reference

12 December 2020

Presence of nonlinear excitations in DNA structure and their relationship to DNA premelting and to drug intercalation

1 reference

12 December 2020

Energetics of the strand separation transition in superhelical DNA

1 reference

12 December 2020

Contributions of the TATA box sequence to rate-limiting steps in transcription initiation by RNA polymerase II

1 reference

12 December 2020

Dynamics and thermodynamics of a nonlinear model for DNA denaturation

1 reference

12 December 2020

DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent

1 reference

12 December 2020

Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA

1 reference

12 December 2020

Solitons hiding in DNA and their possible significance in RNA transcription

1 reference

12 December 2020

Entropy-driven DNA denaturation

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKH335

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

15004245

1 reference