Evaluating the evaluation of cancer driver genes (Q37514933)

20 August 2017

Evaluating the evaluation of cancer driver genes (English)

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20 August 2017

4

Bert Vogelstein

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Kenneth W. Kinzler

series ordinal

3

object named as

Kenneth W Kinzler

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20 August 2017

1

Collin J Tokheim

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20 August 2017

Nickolas Papadopoulos

series ordinal

2

object named as

Nickolas Papadopoulos

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20 August 2017

5

Rachel Karchin

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20 August 2017

language of work or name

English

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publication date

22 November 2016

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Proceedings of the National Academy of Sciences of the United States of America

20 August 2017

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20 August 2017

113

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20 August 2017

14330-14335

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20 August 2017

50

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describes a project that uses

20 August 2017

Jupyter notebook file

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Challenges in identifying cancer genes by analysis of exome sequencing data.

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations

23 August 2017

1 reference

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Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes

23 August 2017

1 reference

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Statistically identifying tumor suppressors and oncogenes from pan-cancer genome-sequencing data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

The UCSC Genome Browser database: 2015 update

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Discovery and saturation analysis of cancer genes across 21 tumour types

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Comprehensive identification of mutational cancer driver genes across 12 tumor types

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Emerging patterns of somatic mutations in cancer

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Mutational heterogeneity in cancer and the search for new cancer-associated genes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

23 August 2017

Cancer genome landscapes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Half or more of the somatic mutations in cancers of self-renewing tissues originate prior to tumor initiation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

CRAVAT: cancer-related analysis of variants toolkit

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Functional impact bias reveals cancer drivers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

MuSiC: identifying mutational significance in cancer genomes

23 August 2017

1 reference

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CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer

23 August 2017

1 reference

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COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

23 August 2017

1 reference

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Design and analysis issues in genome-wide somatic mutation studies of cancer

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

The consensus coding sequences of human breast and colorectal cancers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

A census of human cancer genes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Statistical significance for genomewide studies

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Differential DNA mismatch repair underlies mutation rate variation across the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Cumulative haploinsufficiency and triplosensitivity drive aneuploidy patterns and shape the cancer genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Chromatin organization is a major influence on regional mutation rates in human cancer cells.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5167163

Shape Quantization and Recognition with Randomized Trees

2 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1616440113

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1616440113

Database resources of the National Center for Biotechnology Information

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1616440113

The Saw-Toothed Behavior of Power Versus Sample Size and Software Solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1616440113

21 January 2018

Identifiers

DOI

10.1073/PNAS.1616440113

1 reference

20 August 2017

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20 August 2017

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