Development of a novel output value for quantitative assessment in methylated DNA immunoprecipitation-CpG island microarray analysis. (Q37388548)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

title

Development of a novel output value for quantitative assessment in methylated DNA immunoprecipitation-CpG island microarray analysis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

5

1 reference

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8 February 2020

author name string

Satoshi Yamashita

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Kosuke Hosoya

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Ken Gyobu

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Hideyuki Takeshima

4

1 reference

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8 February 2020

publication date

18 September 2009

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8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

page(s)

275-286

1 reference

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8 February 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

Developmental programming of CpG island methylation profiles in the human genome

8 February 2020

cites work

1 reference

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Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

6 September 2017

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Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis

6 September 2017

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Identification of thyroid hormone receptor binding sites and target genes using ChIP-on-chip in developing mouse cerebellum.

6 September 2017

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

6 September 2017

1 reference

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A human B cell methylome at 100-base pair resolution

6 September 2017

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MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment.

6 September 2017

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A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

6 September 2017

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DNA methylation landscapes: provocative insights from epigenomics

6 September 2017

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Regulation of mammalian gene expression by retroelements and non-coding tandem repeats

6 September 2017

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Epithelial progeny of estrogen-exposed breast progenitor cells display a cancer-like methylome

6 September 2017

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Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

6 September 2017

1 reference

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The epigenomics of cancer

6 September 2017

1 reference

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DNA methylation profiling of human chromosomes 6, 20 and 22

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

High-resolution mapping of DNA methylation in human genome using oligonucleotide tiling array

6 September 2017

1 reference

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Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

6 September 2017

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Evidence for an instructive mechanism of de novo methylation in cancer cells.

6 September 2017

1 reference

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Chemical genomic screening for methylation-silenced genes in gastric cancer cell lines using 5-aza-2'-deoxycytidine treatment and oligonucleotide microarray

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

DNA methylation and human disease

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Genome-wide map of nucleosome acetylation and methylation in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Promoter-dependent mechanism leading to selective hypomethylation within the 5' region of gene MAGE-A1 in tumor cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Fidelity of the methylation pattern and its variation in the genome.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Methylation-associated silencing of heparan sulfate D-glucosaminyl 3-O-sulfotransferase-2 (3-OST-2) in human breast, colon, lung and pancreatic cancers

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Transcriptional regulatory networks in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Worms gang up on bacteria

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

The presence of a methylation fingerprint of Helicobacter pylori infection in human gastric mucosae.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Identification of genes targeted by CpG island methylator phenotype in neuroblastomas, and their possible integrative involvement in poor prognosis.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Methylation silencing of transforming growth factor-beta receptor type II in rat prostate cancers.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Discovery of epigenetically silenced genes by methylated DNA immunoprecipitation in colon cancer cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Gene body-specific methylation on the active X chromosome

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Larger numbers of silenced genes in cancer cell lines with increased de novo methylation of scattered CpG sites

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Microarray analysis of promoter methylation in lung cancers.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Methylation of polycomb target genes in intestinal cancer is mediated by inflammation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Identification of DNA methylation in 3' genomic regions that are associated with upregulation of gene expression in colorectal cancer.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Identification of silencing of nine genes in human gastric cancers.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762412

Detection and interpretation of altered methylation patterns in cancer cells

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19767598

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The fundamental role of epigenetic events in cancer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19767598

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DNARES/DSP017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19767598%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference