Position of eukaryotic translation initiation factor eIF1A on the 40S ribosomal subunit mapped by directed hydroxyl radical probing. (Q37318477)

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1 February 2020

title

Position of eukaryotic translation initiation factor eIF1A on the 40S ribosomal subunit mapped by directed hydroxyl radical probing (English)

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1 February 2020

2

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1 February 2020

author name string

Yingpu Yu

1

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1 February 2020

Victoria G Kolupaeva

3

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1 February 2020

Anett Unbehaun

4

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1 February 2020

Tatyana Veryasova

5

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1 February 2020

Shao-Chiang Lai

6

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1 February 2020

Peng Hong

7

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1 February 2020

Gerhard Wagner

8

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1 February 2020

Christopher U T Hellen

9

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1 February 2020

Tatyana V Pestova

10

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1 February 2020

language of work or name

English

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publication date

26 June 2009

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1 February 2020

published in

Nucleic Acids Research

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1 February 2020

volume

37

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issue

15

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1 February 2020

page(s)

5167-5182

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Translation initiation on mammalian mRNAs with structured 5'UTRs requires DExH-box protein DHX29.

1 February 2020

cites work

1 reference

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Kinetic analysis of late steps of eukaryotic translation initiation

6 September 2017

1 reference

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Structure of the 30S translation initiation complex.

6 September 2017

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Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes

6 September 2017

1 reference

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The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

N- and C-terminal residues of eIF1A have opposing effects on the fidelity of start codon selection

6 September 2017

1 reference

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Structural basis for mRNA and tRNA positioning on the ribosome

6 September 2017

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Specific functional interactions of nucleotides at key -3 and +4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex

6 September 2017

1 reference

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Interaction between eukaryotic initiation factors 1A and 5B is required for efficient ribosomal subunit joining.

6 September 2017

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Communication between eukaryotic translation initiation factors 5 and 1A within the ribosomal pre-initiation complex plays a role in start site selection

6 September 2017

1 reference

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Structures of the bacterial ribosome at 3.5 A resolution

6 September 2017

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Translation initiation: structures, mechanisms and evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

The eIF1A C-terminal domain promotes initiation complex assembly, scanning and AUG selection in vivo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Binding of eukaryotic initiation factor 3 to ribosomal 40S subunits and its role in ribosomal dissociation and anti-association

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

A conformational change in the eukaryotic translation preinitiation complex and release of eIF1 signal recognition of the start codon

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Mapping the binding interface between human eukaryotic initiation factors 1A and 5B: a new interaction between old partners

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Domains of eIF1A that mediate binding to eIF2, eIF3 and eIF5B and promote ternary complex recruitment in vivo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Codon-anticodon interaction at the P site is a prerequisite for tRNA interaction with the small ribosomal subunit

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Preparation and activity of synthetic unmodified mammalian tRNAi(Met) in initiation of translation in vitro

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

The path of messenger RNA through the ribosome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Crystal structure of the ribosome at 5.5 A resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Crystal structure of an initiation factor bound to the 30S ribosomal subunit

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

A multifactor complex of eukaryotic initiation factors, eIF1, eIF2, eIF3, eIF5, and initiator tRNA(Met) is an important translation initiation intermediate in vivo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

The eIF1A solution structure reveals a large RNA-binding surface important for scanning function

6 September 2017

1 reference

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Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codons

6 September 2017

1 reference

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The structure of the translational initiation factor IF1 from E.coli contains an oligomer-binding motif

6 September 2017

1 reference

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MOLMOL: a program for display and analysis of macromolecular structures

6 September 2017

1 reference

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The fidelity of translation initiation: reciprocal activities of eIF1, IF3 and YciH.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Pi release from eIF2, not GTP hydrolysis, is the step controlled by start-site selection during eukaryotic translation initiation

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Interaction of translation initiation factor 3 with the 30S ribosomal subunit

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Specific protection of 16 S rRNA by translational initiation factors

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2731904

Assembly and analysis of eukaryotic translation initiation complexes

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19561193

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19561193

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP519

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19561193%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19561193%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

1 reference