Epigenomic profiling of primary gastric adenocarcinoma reveals super-enhancer heterogeneity (Q37315416)

19 August 2017

Epigenomic profiling of primary gastric adenocarcinoma reveals super-enhancer heterogeneity (English)

1 reference

19 August 2017

1 reference

1 reference

gastric adenocarcinoma

1 reference

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27677335%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Sun Young Rha

27

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1 June 2020

Axel M Hillmer

29

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1 June 2020

Jim R Hughes

30

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1 June 2020

Steven G. Rozen

31

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1 June 2020

Bin Tean Teh

32

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1 June 2020

Melissa J Fullwood

33

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1 June 2020

author name string

Wen Fong Ooi

1

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1 June 2020

Manjie Xing

2

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1 June 2020

Chang Xu

3

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1 June 2020

Xiaosai Yao

4

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1 June 2020

Muhammad Khairul Ramlee

5

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1 June 2020

Mei Chee Lim

6

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1 June 2020

Fan Cao

7

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1 June 2020

Kevin Lim

8

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1 June 2020

Deepak Babu

9

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1 June 2020

Lai-Fong Poon

10

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1 June 2020

Joyce Lin Suling

11

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1 June 2020

Aditi Qamra

12

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1 June 2020

James Qu Zhengzhong

14

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1 June 2020

Tannistha Nandi

15

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1 June 2020

Ai Ping Lee-Lim

16

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1 June 2020

Yang Sun Chan

17

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1 June 2020

Su Ting Tay

18

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1 June 2020

Ming Hui Lee

19

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1 June 2020

James O J Davies

20

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1 June 2020

Wai Keong Wong

21

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1 June 2020

Khee Chee Soo

22

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1 June 2020

Weng Hoong Chan

23

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Hock Soo Ong

24

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Chow Yin Wong

26

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1 June 2020

Shang Li

34

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1 June 2020

Patrick Tan

35

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1 June 2020

Astrid Irwanto

13

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1 June 2020

Jianjun Liu

28

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1 June 2020

language of work or name

English

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publication date

28 September 2016

1 reference

19 August 2017

Nature Communications

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27677335%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

volume

7

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27677335%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

page(s)

12983

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Creative Commons Attribution 4.0 International

1 June 2020

copyright license

start time

28 September 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms12983

0 references

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MALAT1 promotes cell proliferation in gastric cancer by recruiting SF2/ASF.

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Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing

6 September 2017

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Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants

6 September 2017

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Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma.

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6 September 2017

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6 September 2017

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6 September 2017

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Accurate estimation of short read mapping quality for next-generation genome sequencing

6 September 2017

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The accessible chromatin landscape of the human genome

6 September 2017

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Gastric intestinal metaplasia revisited: function and regulation of CDX2.

6 September 2017

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Transcription factors: from enhancer binding to developmental control

6 September 2017

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Expression and significance of homeodomain protein Cdx2 in gastric carcinoma and precancerous lesions

6 September 2017

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Epigenomic enhancer profiling defines a signature of colon cancer

6 September 2017

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

6 September 2017

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

6 September 2017

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Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer

6 September 2017

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Claudin-4 overexpression is associated with epigenetic derepression in gastric carcinoma.

6 September 2017

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Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

6 September 2017

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Intrinsic subtypes of gastric cancer, based on gene expression pattern, predict survival and respond differently to chemotherapy

6 September 2017

1 reference

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

6 September 2017

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GREAT improves functional interpretation of cis-regulatory regions

6 September 2017

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Gene expression profiling of metaplastic lineages identifies CDH17 as a prognostic marker in early stage gastric cancer

6 September 2017

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

6 September 2017

1 reference

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GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

6 September 2017

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ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome

6 September 2017

1 reference

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Hepatocyte nuclear factor 4alpha is essential for embryonic development of the mouse colon

6 September 2017

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Genetic regulators of large-scale transcriptional signatures in cancer

6 September 2017

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Genomic maps and comparative analysis of histone modifications in human and mouse

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Gene expression profiles in normal and cancer cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Association of the autoimmune disease scleroderma with an immunologic response to cancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Molecular analysis of gastric cancer identifies subtypes associated with distinct clinical outcomes.

14 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Cdx1 and cdx2 expression during intestinal development

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits

28 September 2017

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Cumulative haploinsufficiency and triplosensitivity drive aneuploidy patterns and shape the cancer genome

26 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Quantitative ChIP-Seq normalization reveals global modulation of the epigenome.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Mutually exclusive FGFR2, HER2, and KRAS gene amplifications in gastric cancer revealed by multicolour FISH.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Putative cis-regulatory drivers in colorectal cancer.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Regulatory crosstalk between lineage-survival oncogenes KLF5, GATA4 and GATA6 cooperatively promotes gastric cancer development.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Nanoscale chromatin profiling of gastric adenocarcinoma reveals cancer-associated cryptic promoters and somatically acquired regulatory elements.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Methylation subtypes and large-scale epigenetic alterations in gastric cancer

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Cdx2 ectopic expression induces gastric intestinal metaplasia in transgenic mice.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5052795

Increased expression of long noncoding RNA ABHD11-AS1 in gastric cancer and its clinical significance

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27677335

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27677335

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Excessive CpG island hypermethylation in cancer cell lines versus primary human malignancies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27677335

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS12983

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27677335%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 June 2020

ADS bibcode

2016NatCo...712983O

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27677335%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

1 reference