sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes (Q37202654)

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17 January 2020

title

sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes (English)

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17 January 2020

3

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17 January 2020

author name string

Hsi-Yuan Huang

1

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17 January 2020

Heng-Yi Chang

2

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17 January 2020

Ching-Ping Tseng

4

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17 January 2020

Shinn-Ying Ho

5

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17 January 2020

Chi-Dung Yang

6

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17 January 2020

Yih-Wei Ju

7

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17 January 2020

Hsien-Da Huang

8

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17 January 2020

language of work or name

English

0 references

publication date

16 November 2008

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17 January 2020

published in

Nucleic Acids Research

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17 January 2020

volume

37

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17 January 2020

issue

Database issue

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17 January 2020

page(s)

D150-4

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RNALogo: a new approach to display structural RNA alignment

17 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

NONCODE v2.0: decoding the non-coding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

Target identification of small noncoding RNAs in bacteria

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

NCBI GEO: mining tens of millions of expression profiles--database and tools update

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

The UCSC Archaeal Genome Browser

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

NPInter: the noncoding RNAs and protein related biomacromolecules interaction database

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

Micros for microbes: non-coding regulatory RNAs in bacteria

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

EcoCyc: a comprehensive database resource for Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

Rfam: annotating non-coding RNAs in complete genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

Vienna RNA secondary structure server

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

Regulatory roles for small RNAs in bacteria

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

ASAP, a systematic annotation package for community analysis of genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686527

3 September 2018

Identifiers

DOI

10.1093/NAR/GKN852

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19015153%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/HuangCCTHYJH09

17 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19015153%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference