CoinFold: a web server for protein contact prediction and contact-assisted protein folding (Q37182064)

18 August 2017

CoinFold: a web server for protein contact prediction and contact-assisted protein folding (English)

1 reference

18 August 2017

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1 reference

Sheng Wang

1

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18 August 2017

Wei Li

2

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18 August 2017

Renyu Zhang

3

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18 August 2017

Shiwang Liu

4

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18 August 2017

Jinbo Xu

5

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18 August 2017

language of work or name

English

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publication date

25 April 2016

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18 August 2017

Nucleic Acids Research

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18 August 2017

44

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18 August 2017

W1

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18 August 2017

W361-6

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Creative Commons Attribution-NonCommercial 4.0 International

18 August 2017

start time

14 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

CASP11 statistics and the prediction center evaluation system

1 reference

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Protein Secondary Structure Prediction Using Deep Convolutional Neural Fields

6 September 2017

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Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction.

6 September 2017

1 reference

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AcconPred: Predicting Solvent Accessibility and Contact Number Simultaneously by a Multitask Learning Framework under the Conditional Neural Fields Model.

6 September 2017

1 reference

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Protein contact prediction by integrating joint evolutionary coupling analysis and supervised learning.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

6 September 2017

1 reference

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CONFOLD: Residue-residue contact-guided ab initio protein folding.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

RBO Aleph: leveraging novel information sources for protein structure prediction.

6 September 2017

1 reference

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MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

The joint graphical lasso for inverse covariance estimation across multiple classes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

RaptorX server: a resource for template-based protein structure modeling.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

One contact for every twelve residues allows robust and accurate topology-level protein structure modeling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Protein threading using context-specific alignment potential

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

The Protein Model Portal--a comprehensive resource for protein structure and model information

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Emerging methods in protein co-evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Protein structure prediction from sequence variation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Deep architectures for protein contact map prediction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Template-based protein structure modeling using the RaptorX web server.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

A position-specific distance-dependent statistical potential for protein structure and functional study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Protein 3D structure computed from evolutionary sequence variation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Protein homology detection by HMM-HMM comparison

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Scoring function for automated assessment of protein structure template quality

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

CCMpred--fast and precise prediction of protein residue-residue contacts from correlated mutations

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987891

3 September 2018

Identifiers

DOI

10.1093/NAR/GKW307

1 reference

18 August 2017

journals/nar/WangLZLX16

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

18 August 2017

1 reference