Complexity and modularity of intracellular networks: a systematic approach for modelling and simulation (Q37176132)

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17 January 2020

title

Complexity and modularity of intracellular networks: a systematic approach for modelling and simulation (English)

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17 January 2020

3

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17 January 2020

author name string

M L Blinov

series ordinal

1

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17 January 2020

O Ruebenacker

series ordinal

2

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17 January 2020

publication date

1 September 2008

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17 January 2020

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17 January 2020

volume

2

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17 January 2020

issue

5

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17 January 2020

page(s)

363-368

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Kinetic Modeling using BioPAX ontology

17 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology

6 September 2017

1 reference

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Reactome: a knowledge base of biologic pathways and processes

6 September 2017

1 reference

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Structure-based kinetic models of modular signaling protein function: focus on Shp2.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

Rules for modeling signal-transduction systems

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

Domains, motifs, and scaffolds: the role of modular interactions in the evolution and wiring of cell signaling circuits.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

PAX of mind for pathway researchers

6 September 2017

1 reference

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Intracellular signaling: spatial and temporal control

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

Automatic generation of cellular reaction networks with Moleculizer 1.0.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains

6 September 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

6 September 2017

1 reference

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Assembly of Cell Regulatory Systems Through Protein Interaction Domains

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

Hierarchical organization of modularity in metabolic networks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

The Virtual Cell: a software environment for computational cell biology

6 September 2017

1 reference

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CD4 enhances T cell sensitivity to antigen by coordinating Lck accumulation at the immunological synapse

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

Investigation of early events in Fc epsilon RI-mediated signaling using a detailed mathematical model

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675916

Quantification of Short Term Signaling by the Epidermal Growth Factor Receptor

3 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19045831

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19045831

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1049/IET-SYB:20080092

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17 January 2020

1 reference

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17 January 2020

PubMed publication ID

19045831

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19045831%20AND%20SRC:MED&resulttype=core&format=json