A minimized rRNA-binding site for ribosomal protein S4 and its implications for 30S assembly (Q37149775)

18 August 2017

A minimized rRNA-binding site for ribosomal protein S4 and its implications for 30S assembly (English)

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18 August 2017

2

Sarah A Woodson

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author name string

Deepti L Bellur

series ordinal

1

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18 August 2017

language of work or name

English

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publication date

3 February 2009

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18 August 2017

Nucleic Acids Research

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18 August 2017

37

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18 August 2017

6

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18 August 2017

1886-1896

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describes a project that uses

18 August 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2665224/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

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Structural basis for mRNA and tRNA positioning on the ribosome

6 September 2017

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Structures of the bacterial ribosome at 3.5 A resolution

6 September 2017

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Ribosomal protein S4 is a transcription factor with properties remarkably similar to NusA, a protein involved in both non-ribosomal and ribosomal RNA antitermination.

6 September 2017

1 reference

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Structure of the 30S ribosomal subunit

6 September 2017

1 reference

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Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

6 September 2017

1 reference

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Efficient reconstitution of functional Escherichia coli 30S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins

6 September 2017

1 reference

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

6 September 2017

1 reference

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The solution structure of ribosomal protein S4 delta41 reveals two subdomains and a positively charged surface that may interact with RNA

6 September 2017

1 reference

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The crystal structure of ribosomal protein S4 reveals a two-domain molecule with an extensive RNA-binding surface: one domain shows structural homology to the ETS DNA-binding motif

6 September 2017

1 reference

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Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site

6 September 2017

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Quantitative DNA sequencing to determine the relative protein-DNA binding constants to multiple DNA sequences

6 September 2017

1 reference

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Allosteric mechanism for translational repression in the Escherichia coli alpha operon

6 September 2017

1 reference

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The binding site for ribosomal protein S8 in 16S rRNA and spc mRNA from Escherichia coli: minimum structural requirements and the effects of single bulged bases on S8-RNA interaction

6 September 2017

1 reference

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In vitro expression of Escherichia coli ribosomal protein genes: autogenous inhibition of translation

6 September 2017

1 reference

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Total reconstitution of functionally active 50S ribosomal subunits from Escherichia coli

6 September 2017

1 reference

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Location of Ribosomal Protein Binding Sites on 16S Ribosomal RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Localization of the binding site for protein S4 on 16 S ribosomal RNA by chemical and enzymatic probing and primer extension

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

S4-16 S ribosomal RNA complex. Binding constant measurements and specific recognition of a 460-nucleotide region

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

The assembly of prokaryotic ribosomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Location and characteristics of ribosomal protein binding sites in the 16S RNA of Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

An Investigation of the 16-S RNA Binding Sites of Ribosomal Proteins S4, S8, S15 and S20 from Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

RNA-protein cross-linking in Escherichia coli 30S ribosomal subunits; determination of sites on 16S RNA that are cross-linked to proteins S3, S4, S7, S9, S10, S11, S17, S18 and S21 by treatment with bis-(2-chloroethyl)-methylamine

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

A functional pseudoknot in 16S ribosomal RNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Analysis of rpsD mutations in Escherichia coli. III: Effects of rpsD mutations on expression of some ribosomal protein genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Assembly mapping of 30S ribosomal proteins from E. coli

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Specific interaction between ribosomal protein S4 and the alpha operon messenger RNA.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Assembly of the 30S subunit from Escherichia coli ribosomes occurs via two assembly domains which are initiated by S4 and S7.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Evidence for allosteric coupling between the ribosome and repressor binding sites of a translationally regulated mRNA.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

RNA recognition by Tat-derived peptides: interaction in the major groove?

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Recognition of 16S rRNA by ribosomal protein S4 from Bacillus stearothermophilus

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

A temperature-dependent conformational rearrangement in the ribosomal protein S4.16 S rRNA complex

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Minimal 16S rRNA binding site and role of conserved nucleotides in Escherichia coli ribosomal protein S8 recognition.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Mutational and structural analysis of the RNA binding site for Escherichia coli ribosomal protein S7.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Crystal structure of the 30 s ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 s RNA

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Protein-independent Folding Pathway of the 16S rRNA 5′ Domain

20 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665224

Structural preordering in the N-terminal region of ribosomal protein S4 revealed by heteronuclear NMR spectroscopy

4 December 2018

1 reference

12 December 2020

Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension

1 reference

12 December 2020

Dissection of the 16S rRNA binding site for ribosomal protein S4

1 reference

12 December 2020

Protein-RNA recognition

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKP036

1 reference

18 August 2017

1 reference

18 August 2017

PubMed publication ID

19190093

1 reference