Overview of tandem mass spectrometry (MS/MS) database search algorithms (Q37144829)

18 August 2017

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title

Overview of tandem mass spectrometry (MS/MS) database search algorithms (English)

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18 August 2017

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18 August 2017

Eugene Kapp

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18 August 2017

1 August 2007

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Current protocols in protein science / editorial board John E. Coligan ... [et al.]

18 August 2017

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18 August 2017

Chapter 25

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18 August 2017

Unit25.2

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Determination of the Amino Acid Sequence in Oligopeptides by Computer Interpretation of Their High-Resolution Mass Spectra1

18 August 2017

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Potential for false positive identifications from large databases through tandem mass spectrometry.

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Identification of N-linked oligosaccharides of rat insulin-like growth factor binding protein-4.

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

OLAV: towards high-throughput tandem mass spectrometry data identification

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics.

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

TANDEM: matching proteins with tandem mass spectra

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

21 January 2018

The PeptideAtlas project

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Parallel tandem: a program for parallel processing of tandem mass spectra using PVM or MPI and X!Tandem.

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Intensity-based protein identification by machine learning from a library of tandem mass spectra.

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Open mass spectrometry search algorithm

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Strategy for the mass spectrometric verification and correction of the primary structures of proteins deduced from their DNA sequences

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Direct database searching with MALDI-PSD spectra of peptides

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Characterization of the human salivary proteome by capillary isoelectric focusing/nanoreversed-phase liquid chromatography coupled with ESI-tandem MS.

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation.

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

General framework for developing and evaluating database scoring algorithms using the TANDEM search engine

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

A statistical model for identifying proteins by tandem mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Rapid identification of proteins by peptide-mass fingerprinting

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

The ABC's (and XYZ's) of peptide sequencing

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471140864.PS2502S49

10.1002/0471140864.PS2502S49

21 January 2018

Identifiers

DOI

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18 August 2017

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PubMed ID

18429324