Structure and expression analysis of rice paleo duplications (Q37118810)

18 August 2017

Structure and expression analysis of rice paleo duplications (English)

1 reference

18 August 2017

14

Jérôme Salse

0 references

Umar Masood Quraishi

object named as

Umar Masood Quraishi

6

0 references

Peter M Rogowsky

object named as

Peter Rogowsky

9

0 references

author name string

Mickael Throude

1

1 reference

18 August 2017

Stéphanie Bolot

2

1 reference

18 August 2017

Mickael Bosio

3

1 reference

18 August 2017

Caroline Pont

4

1 reference

18 August 2017

Xavier Sarda

5

1 reference

18 August 2017

Fabienne Bourgis

7

1 reference

18 August 2017

Philippe Lessard

8

1 reference

18 August 2017

Alain Ghesquiere

10

1 reference

18 August 2017

Alain Murigneux

11

1 reference

18 August 2017

Gilles Charmet

12

1 reference

18 August 2017

Pascual Perez

13

1 reference

18 August 2017

language of work or name

English

0 references

publication date

9 January 2009

1 reference

18 August 2017

12

1 reference

inferred from page(s)

published in

Nucleic Acids Research

1 reference

18 August 2017

37

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18 August 2017

4

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18 August 2017

1248-1259

1 reference

describes a project that uses

18 August 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/2651813

inferred from PubMed Central ID database lookup

cites work

Characterization of paralogous protein families in rice

1 reference

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Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution

14 September 2017

1 reference

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Extensive concerted evolution of rice paralogs and the road to regaining independence

14 September 2017

1 reference

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Local coexpression domains in the genome of rice show no microsynteny with Arabidopsis domains

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

The map-based sequence of the rice genome

14 September 2017

1 reference

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Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture

14 September 2017

1 reference

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The Genomes of Oryza sativa: a history of duplications

14 September 2017

1 reference

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Rapid evolution of expression and regulatory divergences after yeast gene duplication

14 September 2017

1 reference

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Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

limmaGUI: a graphical user interface for linear modeling of microarray data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Coexpression of neighboring genes in the genome of Arabidopsis thaliana

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Structure and evolution of cereal genomes

14 September 2017

1 reference

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Divergence in the spatial pattern of gene expression between human duplicate genes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Synteny between Arabidopsis thaliana and rice at the genome level: a tool to identify conservation in the ongoing rice genome sequencing project

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

The evolutionary fate and consequences of duplicate genes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Gene dosage and stochastic effects determine the severity and direction of uniparental ribosomal RNA gene silencing (nucleolar dominance) in Arabidopsis allopolyploids

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Basic local alignment search tool

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Transcription factors in rice: a genome-wide comparative analysis between monocots and eudicots.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Duplication and DNA segmental loss in the rice genome: implications for diploidization.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Composition and structure of the centromeric region of rice chromosome 8.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Evidence that rice and other cereals are ancient aneuploids

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Extensive duplication and reshuffling in the Arabidopsis genome.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Divergence in Expression between Duplicated Genes in Arabidopsis

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Genome-wide transcription analyses in rice using tiling microarrays

4 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Gene Expression Evolves Faster in Narrowly Than in Broadly Expressed Mammalian Genes

4 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651813

Duplication of CaMV 35S Promoter Sequences Creates a Strong Enhancer for Plant Genes

4 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19136467

12 December 2020

inferred from PubMed ID database lookup

Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19136467

12 December 2020

inferred from PubMed ID database lookup

New in silico insight into the synteny between rice (Oryza sativa L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19136467

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKN1048

1 reference

18 August 2017

1 reference

18 August 2017

1 reference