Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes (Q37033001)

17 August 2017

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title

Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes (English)

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17 August 2017

Pawel Michalak

1

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17 August 2017

21 December 2007

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17 August 2017

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17 August 2017

91

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17 August 2017

3

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17 August 2017

243-248

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A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression

17 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Regulation of adjacent yeast genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Evidence for large domains of similarly expressed genes in the Drosophila genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Large clusters of co-expressed genes in the Drosophila genome.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Regulated chromatin domain comprising cluster of co-expressed genes in Drosophila melanogaster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Clustered organization of reproductive genes in the C. elegans genome.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Clustering of Tissue-Specific Genes Underlies Much of the Similarity in Rates of Protein Evolution of Linked Genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Clusters of co-expressed genes in mammalian genomes are conserved by natural selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Evolutionary Origin and Maintenance of Coexpressed Gene Clusters in Mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

The human transcriptome map: clustering of highly expressed genes in chromosomal domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Clustering of housekeeping genes provides a unified model of gene order in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Chromosomal clustering of a human transcriptome reveals regulatory background

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Coexpression of neighboring genes in the genome of Arabidopsis thaliana

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

A gene expression map of Arabidopsis thaliana development

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Local coexpression domains of two to four genes in the genome of Arabidopsis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Islands of co-expressed neighbouring genes in Arabidopsis thaliana suggest higher-order chromosome domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

The evolutionary dynamics of eukaryotic gene order

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

7 January 2021

Hb switching in chickens

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal domain.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Gene expression neighborhoods

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

The role of chromatin structure in regulating the expression of clustered genes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

An abundance of bidirectional promoters in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Stable evolutionary signal in a yeast protein interaction network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Coevolution of gene expression among interacting proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Genomic gene clustering analysis of pathways in eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

A gene expression map of the Arabidopsis root

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

A gene atlas of the mouse and human protein-encoding transcriptomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

A neutral model of transcriptome evolution

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Genomic analysis of regulatory network dynamics reveals large topological changes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Evolutionary significance of gene expression divergence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Operons in C. elegans: polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Inactivation of transcription by UV irradiation of T. brucei provides evidence for a multicistronic transcription unit including a VSG gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Genomic overview of mRNA 5'-leader trans-splicing in the ascidian Ciona intestinalis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Gene linkage and steady state RNAs suggest trans-splicing may be associated with a polycistronic transcript in Schistosoma mansoni.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

The miniaturized nuclear genome of eukaryotic endosymbiont contains genes that overlap, genes that are cotranscribed, and the smallest known spliceosomal introns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Eukaryotic operon-like transcription of functionally related genes in Drosophila.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Expression of growth/differentiation factor 1 in the nervous system: conservation of a bicistronic structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Operons as a common form of chromosomal organization in C. elegans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

A global analysis of Caenorhabditis elegans operons

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Initiation of translation in prokaryotes and eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Teamed up for transcription

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Gene context conservation of a higher order than operons.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Tandem clusters of membrane proteins in complete genome sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

A genome-wide transcriptional analysis of the mitotic cell cycle

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Long-range control of expression in yeast.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Periodic epi-organization of the yeast genome revealed by the distribution of promoter sites.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

A haploid-specific transcriptional response to irradiation in Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Spurious spatial periodicity of co-expression in microarray data due to printing design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Spotting effect in microarray experiments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Co-expressed yeast genes cluster over a long range but are not regularly spaced

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Organ-specific expression of Arabidopsis genome during development.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

A unification of mosaic structures in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Nuclear re-organisation of the Hoxb complex during mouse embryonic development.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

ATP-dependent remodeling and acetylation as regulators of chromatin fluidity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Targeted recruitment of histone acetyltransferase activity to a locus control region

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Domain-wide regulation of gene expression in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Comprehensive annotation of bidirectional promoters identifies co-regulation among breast and ovarian cancer genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Quantifying the relationship between co-expression, co-regulation and gene function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Bystander gene activation by a locus control region

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Inter-species differences of co-expression of neighboring genes in eukaryotic genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

A gene expression map for the euchromatic genome of Drosophila melanogaster.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

Modelling the correlation between the activities of adjacent genes in Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.002

10.1016/J.YGENO.2007.11.002

7 January 2021

Identifiers

DOI

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17 August 2017

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PubMed ID

18082363