Stationary phase mutagenesis in B. subtilis: a paradigm to study genetic diversity programs in cells under stress (Q36961669)

17 August 2017

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title

Stationary phase mutagenesis in B. subtilis: a paradigm to study genetic diversity programs in cells under stress (English)

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17 August 2017

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Eduardo A Robleto

1

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17 August 2017

Ronald Yasbin

series ordinal

2

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17 August 2017

Christian Ross

series ordinal

3

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17 August 2017

Mario Pedraza-Reyes

series ordinal

4

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17 August 2017

publication date

1 September 2007

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Critical Reviews in Biochemistry and Molecular Biology

17 August 2017

published in

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17 August 2017

volume

42

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17 August 2017

issue

5

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17 August 2017

page(s)

327-339

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Genetic composition of the Bacillus subtilis SOS system

17 August 2017

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Stationary-phase mutation in the bacterial chromosome: recombination protein and DNA polymerase IV dependence

21 January 2018

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YtkD and MutT protect vegetative cells but not spores of Bacillus subtilis from oxidative stress

21 January 2018

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RNA polymerase II bypass of oxidative DNA damage is regulated by transcription elongation factors

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Revisiting the stringent response, ppGpp and starvation signaling.

21 January 2018

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Induction of competence regulons as a general response to stress in gram-positive bacteria

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The bacterial condensin/cohesin-like protein complex acts in DNA repair and regulation of gene expression

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Mitotic checkpoints, genetic instability, and cancer

21 January 2018

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Translesion synthesis by RNA polymerases: occurrence and biological implications for transcriptional mutagenesis

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Binding of the Bacillus subtilis LexA protein to the SOS operator

21 January 2018

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The influence of the mismatch-repair system on stationary-phase mutagenesis in the yeast Saccharomyces cerevisiae.

21 January 2018

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Mismatch repair protein MutL becomes limiting during stationary-phase mutation

21 January 2018

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Roles of E. coli double-strand-break-repair proteins in stress-induced mutation

21 January 2018

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General stress response of Bacillus subtilis and other bacteria

21 January 2018

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The role of respiration, reactive oxygen species and oxidative stress in mother cell-specific ageing of yeast strains defective in the RAS signalling pathway

21 January 2018

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Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification

21 January 2018

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Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/antitermination decisions

21 January 2018

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Adaptive mutation and amplification in Escherichia coli: two pathways of genome adaptation under stress

21 January 2018

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Cell-selfish modes of evolution and mutations directed after transcriptional bypass

21 January 2018

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The bypass of DNA lesions by DNA and RNA polymerases.

21 January 2018

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Promoter-creating mutations in Pseudomonas putida: a model system for the study of mutation in starving bacteria

21 January 2018

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Multiple catalase genes are differentially regulated in Aspergillus nidulans

21 January 2018

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Stationary phase mutagenesis: mechanisms that accelerate adaptation of microbial populations under environmental stress

21 January 2018

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An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation

21 January 2018

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The complete genome sequence of the gram-positive bacterium Bacillus subtilis

21 January 2018

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A polyphosphate-lon protease complex in the adaptation of Escherichia coli to amino acid starvation

21 January 2018

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Transcription activities at 8-oxoG lesions in DNA.

21 January 2018

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Error‐prone DNA polymerase IV is controlled by the stress‐response sigma factor, RpoS, in Escherichia coli

21 January 2018

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The structure of CodY, a GTP- and isoleucine-responsive regulator of stationary phase and virulence in gram-positive bacteria

21 January 2018

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General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli

21 January 2018

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Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop

21 January 2018

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Cell cycle-dependent localization of two novel prokaryotic chromosome segregation and condensation proteins in Bacillus subtilis that interact with SMC protein

21 January 2018

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The SOS response regulates adaptive mutation

21 January 2018

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SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification

21 January 2018

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Preferential DNA repair of an active gene in human cells

21 January 2018

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Products of DNA mismatch repair genes mutS and mutL are required for transcription-coupled nucleotide-excision repair of the lactose operon in Escherichia coli

21 January 2018

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Cloning of the sodA gene from Corynebacterium melassecola and role of superoxide dismutase in cellular viability

21 January 2018

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Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis

21 January 2018

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Catabolite repression mediated by the CcpA protein in Bacillus subtilis: novel modes of regulation revealed by whole-genome analyses

21 January 2018

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A role for the umuDC gene products of Escherichia coli in increasing resistance to DNA damage in stationary phase by inhibiting the transition to exponential growth

21 January 2018

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Differential roles of the universal stress proteins of Escherichia coli in oxidative stress resistance, adhesion, and motility

21 January 2018

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All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis

21 January 2018

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A model for a umuDC-dependent prokaryotic DNA damage checkpoint

21 January 2018

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E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12.

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701597717

Contribution of the mismatch DNA repair system to the generation of stationary-phase-induced mutants of Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Bacillus subtilis sporulation and stationary phase gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Transcriptional regulation of the phoPR operon in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Bacillus subtilis CodY represses early-stationary-phase genes by sensing GTP levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Increased transcription rates correlate with increased reversion rates in leuB and argH Escherichia coli auxotrophs

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701597717

Mfd, the bacterial transcription repair coupling factor: translocation, repair and termination

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701597717

Cancerous hyper-mutagenesis in p53 genes is possibly associated with transcriptional bypass of DNA lesions

21 January 2018

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The role of transient hypermutators in adaptive mutation in Escherichia coli

21 January 2018

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Evolving responsively: adaptive mutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Novel role of mfd: effects on stationary-phase mutagenesis in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

RNA polymerase encounters with DNA damage: transcription-coupled repair or transcriptional mutagenesis?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Molecular mechanism of transcription-repair coupling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Transcription-repair coupling and mutation frequency decline

21 January 2018

1 reference

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Human transcription-repair coupling factor CSB/ERCC6 is a DNA-stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II

21 January 2018

1 reference

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Escherichia coli mfd mutant deficient in "mutation frequency decline" lacks strand-specific repair: in vitro complementation with purified coupling factor

21 January 2018

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Use of in vivo expression technology to identify genes important in growth and survival of Pseudomonas fluorescens Pf0-1 in soil: discovery of expressed sequences with novel genetic organization

21 January 2018

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On the mechanism of gene amplification induced under stress in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701597717

Adaptive mutation: General mutagenesis is not a programmed response to stress but results from rare coamplification of dinB with lac

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Stripping Bacillus: ComK auto-stimulation is responsible for the bistable response in competence development

21 January 2018

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CodY, a global regulator of stationary phase and virulence in Gram-positive bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Transient growth requirement in Bacillus subtilis following the cessation of exponential growth

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701597717

Adaptive, or stationary-phase, mutagenesis, a component of bacterial differentiation in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Roles of YqjH and YqjW, homologs of the Escherichia coli UmuC/DinB or Y superfamily of DNA polymerases, in stationary-phase mutagenesis and UV-induced mutagenesis of Bacillus subtilis

21 January 2018

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The SOS response: recent insights into umuDC-dependent mutagenesis and DNA damage tolerance

21 January 2018

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Mechanisms of transcription-coupled DNA repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Rescue of arrested RNA polymerase II complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis

21 January 2018

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UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

21 January 2018

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Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming

21 January 2018

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The role of sigmaB in the stress response of Gram-positive bacteria -- targets for food preservation and safety

21 January 2018

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RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis

21 January 2018

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Separate mechanisms activate sigma B of Bacillus subtilis in response to environmental and metabolic stresses

21 January 2018

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Nutritional control of elongation of DNA replication by (p)ppGpp

21 January 2018

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Mitotic checkpoints: from yeast to cancer

21 January 2018

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A biochemical mechanism for nonrandom mutations and evolution

21 January 2018

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Stress-directed adaptive mutations and evolution

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701597717

Gene ytkD of Bacillus subtilis encodes an atypical nucleoside triphosphatase member of the Nudix hydrolase superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Mutagenesis and repair in Bacillus anthracis: the effect of mutators

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

Catabolite repression of dra-nupC-pdp operon expression in Bacillus subtilis

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701597717

Escherichia coli evolution during stationary phase

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230701597717

Transcription Repair Coupling Factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230701597717

10.1080/10409230701597717

21 January 2018

Identifiers

DOI

1 reference

17 August 2017

1 reference