Group II introns: structure, folding and splicing mechanism (Q36849999)

16 August 2017

1 reference

title

Group II introns: structure, folding and splicing mechanism (English)

1 reference

16 August 2017

Olga Fedorova

1

1 reference

PubMed ID

17570818

16 August 2017

Nora Zingler

series ordinal

2

1 reference

PubMed ID

17570818

16 August 2017

language of work or name

1 reference

1 July 2007

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16 August 2017

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16 August 2017

388

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16 August 2017

7

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16 August 2017

665-678

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Catalytic role of 2'-hydroxyl groups within a group II intron active site

16 August 2017

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A group II intron inserted into a bacterial heat-shock operon shows autocatalytic activity and unusual thermostability

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

The pathway for DNA recognition and RNA integration by a group II intron retrotransposon

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Reverse self-splicing of group II intron RNAs in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

The CRM domain: an RNA binding module derived from an ancient ribosome-associated protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A tertiary interaction that links active-site domains to the 5' splice site of a group II intron

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Self-splicing of group I introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

More than one way to splice an RNA: branching without a bulge and splicing without branching in group II introns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Control of branch-site choice by a group II intron

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Multiple tertiary interactions involving domain II of group II self-splicing introns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Differential chemical probing of a group II self-splicing intron identifies bases involved in tertiary interactions and supports an alternative secondary structure model of domain V

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A three-dimensional perspective on exon binding by a group II self-splicing intron

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Potential for alternative intron-exon pairings in group II intron RmInt1 from Sinorhizobium meliloti and its relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A group II intron-encoded maturase functions preferentially in cis and requires both the reverse transcriptase and X domains to promote RNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A single active-site region for a group II intron

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Solution structure of domain 6 from a self-splicing group II intron ribozyme: a Mg(2+) binding site is located close to the stacked branch adenosine

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

The rate-limiting step in the folding of a large ribozyme without kinetic traps

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Linking the group II intron catalytic domains: tertiary contacts and structural features of domain 3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Group II intron folding under near-physiological conditions: collapsing to the near-native state

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Studies on mutants deficient in the photosystem I reaction centers in Chlamydomonas reinhardtii

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A nucleosome assembly protein-like polypeptide binds to chloroplast group II intron RNA in Chlamydomonas reinhardtii

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Metal ion coordination by the AGC triad in domain 5 contributes to group II intron catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Mitochondrial Mg(2+) homeostasis is critical for group II intron splicing in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Group II intron ribozymes that cleave DNA and RNA linkages with similar efficiency, and lack contacts with substrate 2'-hydroxyl groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A maturase-encoding group IIA intron of yeast mitochondria self-splices in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Self-splicing group II and nuclear pre-mRNA introns: how similar are they?

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Splice site selection and role of the lariat in a group II intron

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Base-pairing interactions involving the 5' and 3'-terminal nucleotides of group II self-splicing introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Recruitment of a peptidyl-tRNA hydrolase as a facilitator of group II intron splicing in chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Ribozyme catalysis from the major groove of group II intron domain 5.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

21 January 2018

Mobile group II introns

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Mitochondrial introns: a critical view.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Group II introns: structure and catalytic versatility of large natural ribozymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Multiple physical forms of excised group II intron RNAs in wheat mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Mechanism of maturase-promoted group II intron splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A novel multifunctional factor involved in trans-splicing of chloroplast introns in Chlamydomonas

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Structure and activities of group II introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Comparative and functional anatomy of group II catalytic introns--a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: elucidation of reaction mechanism and structure/function relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Deletion of a conserved dinucleotide inhibits the second step of group II intron splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Putative proteins related to group II intron reverse transcriptase/maturases are encoded by nuclear genes in higher plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A DEAD-box protein alone promotes group II intron splicing and reverse splicing by acting as an RNA chaperone

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Excision of the Sinorhizobium meliloti group II intron RmInt1 as circles in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Integration of group II intron bI1 into a foreign RNA by reversal of the self-splicing reaction in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Excision of group II introns as circles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

An mRNA is capped by a 2', 5' lariat catalyzed by a group I-like ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Group II intron splicing factors derived by diversification of an ancient RNA-binding domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Formation of the CRS2-CAF2 group II intron splicing complex is mediated by a 22-amino acid motif in the COOH-terminal region of CAF2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

The stereochemical course of group II intron self-splicing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Catalytically critical nucleotide in domain 5 of a group II intron

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Compaction of a bacterial group I ribozyme coincides with the assembly of core helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

A multiprotein complex involved in chloroplast group II intron splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

The two steps of group II intron self-splicing are mechanistically distinguishable.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Folding of group II introns: a model system for large, multidomain RNAs?

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Stopped-flow fluorescence spectroscopy of a group II intron ribozyme reveals that domain 1 is an independent folding unit with a requirement for specific Mg2+ ions in the tertiary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Assembly of an active group II intron-maturase complex by protein dimerization

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Identification of an RNA-protein complex involved in chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Group II intron retroelements: function and diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Cryptic branch point activation allows accurate in vitro splicing of human beta-globin intron mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Crystal structure of a core spliceosomal protein interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Identification of functional U1 snRNA-pre-mRNA complexes committed to spliceosome assembly and splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Binding of a group II intron-encoded reverse transcriptase/maturase to its high affinity intron RNA binding site involves sequence-specific recognition and autoregulates translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

RNA folding: models and perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Biochemical and NMR analyses of an SF3b155-p14-U2AF-RNA interaction network involved in branch point definition during pre-mRNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

An obligate intermediate along the slow folding pathway of a group II intron ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Visualizing the solvent-inaccessible core of a group II intron ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Productive folding to the native state by a group II intron ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

CRS1 is a novel group II intron splicing factor that was derived from a domain of ancient origin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Self-splicing of a group IIC intron: 5' exon recognition and alternative 5' splicing events implicate the stem-loop motif of a transcriptional terminator

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Unusual group II introns in bacteria of the Bacillus cereus group

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Exposing the kinetic traps in RNA folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Lariat formation and a hydrolytic pathway in plant chloroplast group II intron splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

High-affinity binding site for a group II intron-encoded reverse transcriptase/maturase within a stem-loop structure in the intron RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Mutational analysis of functional domains in Mrs2p, the mitochondrial Mg2+ channel protein of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Recent insights on RNA folding mechanisms from catalytic RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Metal ions and RNA folding: a highly charged topic with a dynamic future

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Sequence specificity of a group II intron ribozyme: multiple mechanisms for promoting unusually high discrimination against mismatched targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Metal-ion coordination by U6 small nuclear RNA contributes to catalysis in the spliceosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage–ligation reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Structural insights into group II intron catalysis and branch-site selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Catalytic site components common to both splicing steps of a group II intron

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

Multiple exon-binding sites in class II self-splicing introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2007.090

21 January 2018

Identifiers

DOI

10.1515/BC.2007.090

1 reference

16 August 2017

1 reference

PubMed ID

17570818