Genomic deletions correlate with underexpression of novel candidate genes at six loci in pediatric pilocytic astrocytoma (Q36787626)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18670637%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

title

Genomic deletions correlate with underexpression of novel candidate genes at six loci in pediatric pilocytic astrocytoma (English)

1 reference

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11 January 2020

main subject

pilocytic astrocytoma

1 reference

1 reference

6

1 reference

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11 January 2020

author name string

Nicola Potter

1

1 reference

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11 January 2020

Aikaterini Karakoula

2

1 reference

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11 January 2020

Kim P Phipps

3

1 reference

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11 January 2020

William Harkness

4

1 reference

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11 January 2020

Richard Hayward

5

1 reference

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11 January 2020

Thomas S Jacques

7

1 reference

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11 January 2020

Brian Harding

8

1 reference

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11 January 2020

David G T Thomas

9

1 reference

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11 January 2020

Rodger W Palmer

10

1 reference

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11 January 2020

Jeremy Rees

11

1 reference

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11 January 2020

John Darling

12

1 reference

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11 January 2020

Tracy J Warr

13

1 reference

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11 January 2020

publication date

1 August 2008

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11 January 2020

1 reference

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11 January 2020

volume

10

1 reference

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11 January 2020

page(s)

757-772

1 reference

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11 January 2020

issue

8

1 reference

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Large-scale copy number variants (CNVs): distribution in normal subjects and FISH/real-time qPCR analysis

11 January 2020

cites work

1 reference

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Study of the SH3-domain GRB2-like 2 gene expression in laryngeal carcinoma.

29 September 2017

1 reference

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Resolving the resolution of array CGH.

29 September 2017

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Global variation in copy number in the human genome

29 September 2017

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Accurate and reliable high-throughput detection of copy number variation in the human genome

29 September 2017

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Genome assembly comparison identifies structural variants in the human genome.

29 September 2017

1 reference

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Genomic analysis of pilocytic astrocytomas at 0.97 Mb resolution shows an increasing tendency toward chromosomal copy number change with age.

29 September 2017

1 reference

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Periostin is frequently overexpressed and enhances invasion and angiogenesis in oral cancer

29 September 2017

1 reference

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Identification of novel candidate target genes in amplicons of Glioblastoma multiforme tumors detected by expression and CGH microarray profiling

29 September 2017

1 reference

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Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome

29 September 2017

1 reference

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Large scale copy number variation (CNV) at 14q12 is associated with the presence of genomic abnormalities in neoplasia

29 September 2017

1 reference

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Increased expression of podoplanin in malignant astrocytic tumors as a novel molecular marker of malignant progression

29 September 2017

1 reference

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Nuclear factor-1-X regulates astrocyte-specific expression of the alpha1-antichymotrypsin and glial fibrillary acidic protein genes

29 September 2017

1 reference

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ABCC drug efflux pumps and organic anion uptake transporters in human gliomas and the blood-tumor barrier

29 September 2017

1 reference

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Astrocyte-specific expression of the alpha1-antichymotrypsin and glial fibrillary acidic protein genes requires activator protein-1.

29 September 2017

1 reference

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Altered expression of immune defense genes in pilocytic astrocytomas

29 September 2017

1 reference

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Association of the calcyon gene (DRD1IP) with attention deficit/hyperactivity disorder.

29 September 2017

1 reference

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Recent additions and improvements to the Onto-Tools

29 September 2017

1 reference

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Tumor suppressor activity and epigenetic inactivation of hepatocyte growth factor activator inhibitor type 2/SPINT2 in papillary and clear cell renal cell carcinoma

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Segmental duplications and copy-number variation in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Epigenetic profiling of cutaneous T-cell lymphoma: promoter hypermethylation of multiple tumor suppressor genes including BCL7a, PTPRG, and p73

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Array comparative genomic hybridization identifies genetic subgroups in grade 4 human astrocytoma

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Microarray analysis of pediatric ependymoma identifies a cluster of 112 candidate genes including four transcripts at 22q12.1-q13.3

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Aberrant methylation of Reprimo in human malignancies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Genetics of glioblastoma multiforme: mitogenic signaling and cell cycle pathways converge.

29 September 2017

1 reference

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Methylation profile of the promoter CpG islands of 31 genes that may contribute to colorectal carcinogenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Detection of large-scale variation in the human genome

29 September 2017

1 reference

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Large-scale copy number polymorphism in the human genome

29 September 2017

1 reference

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Comparative genomic hybridization in central and peripheral nervous system tumors of childhood and adolescence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Periostin potently promotes metastatic growth of colon cancer by augmenting cell survival via the Akt/PKB pathway

29 September 2017

1 reference

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Integration of Smad and forkhead pathways in the control of neuroepithelial and glioblastoma cell proliferation

29 September 2017

1 reference

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Frequent epigenetic inactivation of RIZ1 by promoter hypermethylation in human gastric carcinoma

29 September 2017

1 reference

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Versican/PG-M G3 domain promotes tumor growth and angiogenesis

29 September 2017

1 reference

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Classification of human astrocytic gliomas on the basis of gene expression: a correlated group of genes with angiogenic activity emerges as a strong predictor of subtypes.

29 September 2017

1 reference

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Choice of normal ovarian control influences determination of differentially expressed genes in ovarian cancer expression profiling studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Overexpression of the EGFR/FKBP12/HIF-2alpha pathway identified in childhood astrocytomas by angiogenesis gene profiling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

TM4: a free, open-source system for microarray data management and analysis

29 September 2017

1 reference

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Microarray data normalization and transformation

29 September 2017

1 reference

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Strong HLA-DR expression in microsatellite stable carcinomas of the large bowel is associated with good prognosis

29 September 2017

1 reference

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Inactivation of p57KIP2 by regional promoter hypermethylation and histone deacetylation in human tumors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

29 September 2017

1 reference

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Functional cloning of the proto-oncogene brain factor-1 (BF-1) as a Smad-binding antagonist of transforming growth factor-beta signaling

29 September 2017

1 reference

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The winged-helix protein brain factor 1 interacts with groucho and hes proteins to repress transcription

29 September 2017

1 reference

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Alternative splicing of the WNT-2B/WNT-13 gene

29 September 2017

1 reference

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The gamma-tubulin gene family in humans

29 September 2017

1 reference

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Analysis of pilocytic astrocytoma by comparative genomic hybridization.

29 September 2017

1 reference

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Wnt signalling in mammalian development and cancer

29 September 2017

1 reference

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Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

29 September 2017

1 reference

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KEGG: kyoto encyclopedia of genes and genomes

29 September 2017

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The NG2 chondroitin sulfate proteoglycan: role in malignant progression of human brain tumours

29 September 2017

1 reference

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The BCL7 gene family: deletion of BCL7B in Williams syndrome.

29 September 2017

1 reference

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Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA.

29 September 2017

1 reference

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A modified and improved method for bisulphite based cytosine methylation analysis

29 September 2017

1 reference

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Molecular cloning of complex chromosomal translocation t(8;14;12)(q24.1;q32.3;q24.1) in a Burkitt lymphoma cell line defines a new gene (BCL7A) with homology to caldesmon

29 September 2017

1 reference

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The Wnt-1 (int-1) proto-oncogene is required for development of a large region of the mouse brain

29 September 2017

1 reference

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Gene expression profiling identifies molecular subtypes of inflammatory breast cancer

29 September 2017

1 reference

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Are juvenile pilocytic astrocytomas benign tumors? A cytogenetic study in 24 cases.

27 June 2018

1 reference

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Recurrence patterns and anaplastic change in a long-term study of pilocytic astrocytomas

27 June 2018

1 reference

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Distinct genetic signatures among pilocytic astrocytomas relate to their brain region origin.

27 June 2018

1 reference

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FOXG1 is overexpressed in hepatoblastoma.

5 September 2018

1 reference

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Screening of genomic imbalances in glioblastoma multiforme using high-resolution comparative genomic hybridization.

5 September 2018

1 reference

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Nonsynonymous coding single-nucleotide polymorphisms spanning the genome in relation to glioblastoma survival and age at diagnosis

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Expression of oligodendroglial and astrocytic lineage markers in diffuse gliomas: use of YKL-40, ApoE, ASCL1, and NKX2-2.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Genome-wide allelic imbalance analysis of pediatric gliomas by single nucleotide polymorphic allele array.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Predicting which children are at risk for ependymoma relapse.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Novel amplicons on the short arm of chromosome 7 identified using high resolution array CGH contain over expressed genes in addition to EGFR in glioblastoma multiforme.

5 September 2018

1 reference

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YKL-40 is a differential diagnostic marker for histologic subtypes of high-grade gliomas.

5 September 2018

1 reference

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Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Expression analysis of genes involved in brain tumor progression driven by retroviral insertional mutagenesis in mice.

5 September 2018

1 reference

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Expression profiling of T-cell lymphomas differentiates peripheral and lymphoblastic lymphomas and defines survival related genes.

5 September 2018

1 reference

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Pilocytic astrocytomas in children: prognostic factors--a retrospective study of 80 cases.

5 September 2018

1 reference

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Epigenetic down-regulation of death-associated protein kinase in lung cancers.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Gene expression profiling identifies molecular subtypes of gliomas.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

A combined comparative genomic hybridization and expression microarray analysis of gastric cancer reveals novel molecular subtypes.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Altered expression patterns of group I and II metabotropic glutamate receptors in multiple sclerosis

5 September 2018

1 reference

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Deletion mapping using quantitative real-time PCR identifies two distinct 3p21.3 regions affected in most cervical carcinomas.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Epigenetic changes in pilocytic astrocytomas and medulloblastomas.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

The changing number of cells in the human fetal forebrain and its subdivisions: a stereological analysis.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Differential expression between pilocytic and anaplastic astrocytomas: identification of apolipoprotein D as a marker for low-grade, non-infiltrating primary CNS neoplasms.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Distinctive molecular profiles of high-grade and low-grade gliomas based on oligonucleotide microarray analysis.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Aberrant methylation of genes in low-grade astrocytomas

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Gene expression profiling of low-grade diffuse astrocytomas by cDNA arrays.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Gains and losses of DNA sequences in childhood brain tumors analyzed by comparative genomic hybridization.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

High frequency of TP53 mutations in juvenile pilocytic astrocytomas indicates role of TP53 in the development of these tumors.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Expression pattern of two Frizzled-related genes, Frzb-1 and Sfrp-1, during mouse embryogenesis suggests a role for modulating action of Wnt family members.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Low-grade astrocytoma: a decade of experience at St. Jude Children's Research Hospital.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

p53 gene mutations in human astrocytic brain tumors including pilocytic astrocytomas.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Mouse Wnt genes exhibit discrete domains of expression in the early embryonic CNS and limb buds.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Deletions on the long arm of chromosome 17 in pilocytic astrocytoma.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Nonrandom chromosomal gains in pilocytic astrocytomas of childhood.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Deletion of chromosome arm 17p DNA sequences in pediatric high-grade and juvenile pilocytic astrocytomas.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

Mycosis fungoides shows concurrent deregulation of multiple genes involved in the TNF signaling pathway: an expression profile study

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481566

A high-resolution survey of deletion polymorphism in the human genome

4 December 2018

1 reference

12 December 2020

Gene expression patterns in gastric cancer

1 reference

12 December 2020

Genome-wide detection of chromosomal imbalances in tumors using BAC microarrays

1 reference

12 December 2020

Chromosome 17 abnormalities and lack of TP53 mutations in paediatric central nervous system tumours

1 reference

12 December 2020

Prognostic significance of HLA-DR antigen in serous ovarian tumors

1 reference

12 December 2020

Expression analysis of juvenile pilocytic astrocytomas by oligonucleotide microarray reveals two potential subgroups

1 reference

12 December 2020

Microarray analysis of pediatric ependymoma identifies a cluster of 112 candidate genes including four transcripts at 22q12.1-q13.3

1 reference

12 December 2020

Identifiers

DOI

10.1593/NEO.07914

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18670637%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18670637%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

1 reference