Kinetics and mechanism of K+- and Na+-induced folding of models of human telomeric DNA into G-quadruplex structures (Q36777809)

16 August 2017

Kinetics and mechanism of K+- and Na+-induced folding of models of human telomeric DNA into G-quadruplex structures (English)

1 reference

16 August 2017

Jonathan B Chaires

2

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author name string

Robert D Gray

series ordinal

1

1 reference

PMCID

2475619

16 August 2017

language of work or name

English

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publication date

21 June 2008

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16 August 2017

13

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inferred from page(s)

published in

Nucleic Acids Research

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16 August 2017

36

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16 August 2017

4191-4203

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16 August 2017

12

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Polymorphism of human telomeric quadruplex structures

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Heat capacity changes associated with guanine quadruplex formation: an isothermal titration calorimetry study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

G-quadruplexes induce apoptosis in tumor cells

29 September 2017

1 reference

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Discovery and development of anticancer aptamers

29 September 2017

1 reference

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Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Investigating a quadruplex-ligand interaction by unfolding kinetics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Telomeres and telomerase as targets for anticancer drug development.

29 September 2017

1 reference

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Thermodynamics and kinetics of PNA-DNA quadruplex-forming chimeras

29 September 2017

1 reference

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Thermal difference spectra: a specific signature for nucleic acid structures.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Not so crystal clear: the structure of the human telomere G-quadruplex in solution differs from that present in a crystal

29 September 2017

1 reference

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Ability of thrombin to act as molecular chaperone, inducing formation of quadruplex structure of thrombin-binding aptamer.

29 September 2017

1 reference

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RNA and protein folding: common themes and variations

29 September 2017

1 reference

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Kinetics of tetramolecular quadruplexes

29 September 2017

1 reference

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UCSF Chimera--a visualization system for exploratory research and analysis

29 September 2017

1 reference

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Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

G-quartets 40 years later: from 5'-GMP to molecular biology and supramolecular chemistry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Revised UV extinction coefficients for nucleoside-5'-monophosphates and unpaired DNA and RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: distinct topologies, thermodynamic properties, and folding/unfolding kinetics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Single-molecule transition-state analysis of RNA folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Telomere maintenance as a target for anticancer drug discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Crystal structure of parallel quadruplexes from human telomeric DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Antiproliferative activity of G-quartet-forming oligonucleotides with backbone and sugar modifications.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Quadruplex structures in nucleic acids

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Configurational diffusion down a folding funnel describes the dynamics of DNA hairpins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Is counterion delocalization responsible for collapse in RNA folding?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

G-quadruplex DNA: a potential target for anti-cancer drug design

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Antiproliferative activity of G-rich oligonucleotides correlates with protein binding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Following G-quartet formation by UV-spectroscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Kinetics of conformational fluctuations in DNA hairpin-loops

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

DNA tetraplex formation in the control region of c-myc

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Ion selective folding of loop domains in a potent anti-HIV oligonucleotide

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Kinetic pathway for folding of the Tetrahymena ribozyme revealed by three UV-inducible crosslinks

29 September 2017

1 reference

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Selective localization and rotational immobilization of univalent cations on quadruplex DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Deconvolutions based on singular value decomposition and the pseudoinverse: a guide for beginners

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Negative activation enthalpies in the kinetics of protein folding

29 September 2017

1 reference

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A stopped-flow H-D exchange kinetic study of spermine-polynucleotide interactions

29 September 2017

1 reference

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Monovalent cation-induced structure of telomeric DNA: the G-quartet model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

G-quadruplexes in promoters throughout the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

The selectivity for K+ versus Na+ in DNA quadruplexes is dominated by relative free energies of hydration: a thermodynamic analysis by 1H NMR.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Kinetics of G-quartet-mediated tetramer formation

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

The formation pathway of tetramolecular G-quadruplexes

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Determining the folding and unfolding rate constants of nucleic acids by biosensor. Application to telomere G-quadruplex.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

A practical approach to interpretation of singular value decomposition results

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475619

Sequence dependence of the free energy of B-Z junction formation in deoxyoligonucleotides.

5 September 2018

1 reference

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RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

5 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN379

Kinetics of Unfolding the Human Telomeric DNA Quadruplex Using a PNA Trap

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN379

Structural Competition Involving G-Quadruplex DNA and Its Complement†

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN379

The changing nature of the protein folding transition state: implications for the shape of the free-energy profile for folding

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18567908

12 December 2020

inferred from PubMed ID database lookup

The new models of the human telomere d[AGGG(TTAGGG)3] in K+ solution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18567908

12 December 2020

inferred from PubMed ID database lookup

Folding pathways of human telomeric hybrid G-quadruplex structure

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18567908

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKN379

1 reference

16 August 2017

1 reference

16 August 2017

1 reference

PMCID

2475619