Thermodynamics of protein denatured states (Q36716459)

15 August 2017

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title

Thermodynamics of protein denatured states (English)

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15 August 2017

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Bruce E Bowler

1

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15 August 2017

publication date

7 November 2006

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15 August 2017

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15 August 2017

volume

3

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15 August 2017

issue

2

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15 August 2017

page(s)

88-99

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Dominant forces in protein folding

15 August 2017

cites work

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Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

21 January 2018

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21 January 2018

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Energetics of side chain packing in staphylococcal nuclease assessed by exchange of valines, isoleucines, and leucines

21 January 2018

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Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles

21 January 2018

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Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease

21 January 2018

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Conserved thermodynamic contributions of backbone hydrogen bonds in a protein fold

21 January 2018

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Strength and co-operativity of contributions of surface salt bridges to protein stability

21 January 2018

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pH-induced denaturation of proteins: a single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme

21 January 2018

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Protein stability and surface electrostatics: a charged relationship.

21 January 2018

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Protein folding and misfolding

21 January 2018

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Contact order, transition state placement and the refolding rates of single domain proteins.

21 January 2018

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Is there a unifying mechanism for protein folding?

21 January 2018

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From Levinthal to pathways to funnels

21 January 2018

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Intermediates in the folding reactions of small proteins

21 January 2018

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Protein folding intermediates: native-state hydrogen exchange

21 January 2018

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Energy landscapes and solved protein-folding problems.

21 January 2018

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How do small single-domain proteins fold?

21 January 2018

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Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism

21 January 2018

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Unfolded proteins and protein folding studied by NMR.

21 January 2018

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Persistence of native-like topology in a denatured protein in 8 M urea

21 January 2018

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NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions

21 January 2018

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NOE data demonstrating a compact unfolded state for an SH3 domain under non-denaturing conditions.

21 January 2018

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Long-range interactions within a nonnative protein

21 January 2018

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Hydrophobic clustering in nonnative states of a protein: interpretation of chemical shifts in NMR spectra of denatured states of lysozyme

21 January 2018

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Structural and dynamical properties of a denatured protein. Heteronuclear 3D NMR experiments and theoretical simulations of lysozyme in 8 M urea

21 January 2018

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Aromatic and methyl NOEs highlight hydrophobic clustering in the unfolded state of an SH3 domain

21 January 2018

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Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding

21 January 2018

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Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution

21 January 2018

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Calculation of ensembles of structures representing the unfolded state of an SH3 domain.

21 January 2018

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Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques.

21 January 2018

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Random-coil behavior and the dimensions of chemically unfolded proteins

21 January 2018

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Conformation of the backbone in unfolded proteins.

21 January 2018

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Acid induced conformational transition of denatured cytochrome c in urea and guanidine hydrochloride solutions

21 January 2018

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Many faces of the unfolded state: conformational heterogeneity in denatured yeast cytochrome C.

21 January 2018

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Methionine oxidation of monomeric lambda repressor: the denatured state ensemble under nondenaturing conditions

21 January 2018

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Reverse hydrophobic effects relieved by amino-acid substitutions at a protein surface.

21 January 2018

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Reversible association of the equilibrium unfolding intermediate of lambda Cro repressor.

21 January 2018

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Urea-induced unfolding of the alpha subunit of tryptophan synthase: one-dimensional proton NMR evidence for residual structure near histidine-92 at high denaturant concentration.

21 January 2018

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Mutagenic and thermodynamic analyses of residual structure in the alpha subunit of tryptophan synthase.

21 January 2018

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Evaluation of cooperative interactions between substructures of iso-1-cytochrome c using double mutant cycles.

21 January 2018

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Residual structure in large fragments of staphylococcal nuclease: effects of amino acid substitutions.

21 January 2018

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A model of the changes in denatured state structure underlying m value effects in staphylococcal nuclease

21 January 2018

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Contributions of folding cores to the thermostabilities of two ribonucleases H

21 January 2018

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Energetic evidence for formation of a pH-dependent hydrophobic cluster in the denatured state of Thermus thermophilus ribonuclease H.

21 January 2018

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Role of residual structure in the unfolded state of a thermophilic protein.

21 January 2018

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Native state energetics of the Src SH2 domain: evidence for a partially structured state in the denatured ensemble

21 January 2018

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Stable submolecular folding units in a non-compact form of cytochrome c

21 January 2018

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Folding dynamics of the src SH3 domain

21 January 2018

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pH dependence of the hydrogen exchange in the SH3 domain of alpha-spectrin.

21 January 2018

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Differences between the prion protein and its homolog Doppel: a partially structured state with implications for scrapie formation

21 January 2018

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Folding subdomains of thioredoxin characterized by native-state hydrogen exchange

21 January 2018

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The side chain of aspartic acid 69 dictates the folding mechanism of Bacillus subtilis HPr.

21 January 2018

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pH dependence of the urea and guanidine hydrochloride denaturation of ribonuclease A and ribonuclease T1.

21 January 2018

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Thermodynamics and kinetics of non-native interactions in protein folding: a single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state

21 January 2018

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Mutational analysis demonstrates that specific electrostatic interactions can play a key role in the denatured state ensemble of proteins

21 January 2018

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pKA values of carboxyl groups in the native and denatured states of barnase: the pKA values of the denatured state are on average 0.4 units lower than those of model compounds

21 January 2018

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Perturbed pKA-values in the denatured states of proteins

21 January 2018

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Analysis of the pH-dependent folding and stability of histidine point mutants allows characterization of the denatured state and transition state for protein folding

21 January 2018

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Measurement of side-chain carboxyl pK(a) values of glutamate and aspartate residues in an unfolded protein by multinuclear NMR spectroscopy

21 January 2018

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Site-specific contributions to the pH dependence of protein stability

21 January 2018

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Cytochrome c folding dynamics

21 January 2018

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Denatured state thermodynamics: residual structure, chain stiffness and scaling factors

21 January 2018

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Polymer principles in protein structure and stability.

21 January 2018

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Conformational properties of the iso-1-cytochrome C denatured state: dependence on guanidine hydrochloride concentration

21 January 2018

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Kinetics of loop formation and breakage in the denatured state of iso-1-cytochrome c.

21 January 2018

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Effects of topology and excluded volume on protein denatured state conformational properties

21 January 2018

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Mapping the cytochrome C folding landscape

21 January 2018

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Using deeply trapped intermediates to map the cytochrome c folding landscape

21 January 2018

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The cytochrome c folding landscape revealed by electron-transfer kinetics

21 January 2018

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Identification of the predominant non-native histidine ligand in unfolded cytochrome c.

21 January 2018

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Recombinant equine cytochrome c in Escherichia coli: high-level expression, characterization, and folding and assembly mutants

21 January 2018

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Charge-charge interactions in the denatured state influence the folding kinetics of ribonuclease Sa.

21 January 2018

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Peptide models provide evidence for significant structure in the denatured state of a rapidly folding protein: the villin headpiece subdomain

21 January 2018

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Effect of modulating unfolded state structure on the folding kinetics of the villin headpiece subdomain

21 January 2018

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Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding

21 January 2018

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Exploiting the right side of the Ramachandran plot: substitution of glycines by D-alanine can significantly increase protein stability

21 January 2018

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Design of a hyperstable protein by rational consideration of unfolded state interactions

21 January 2018

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NMR determination of residual structure in a urea-denatured protein, the 434-repressor

21 January 2018

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Urea denaturation of barnase: pH dependence and characterization of the unfolded state

21 January 2018

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21 January 2018

Identifiers

DOI

10.1039/B611895J

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15 August 2017

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