Identification of genes that function in the biogenesis and localization of small nucleolar RNAs in Saccharomyces cerevisiae. (Q36711283)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18378690%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

title

Identification of genes that function in the biogenesis and localization of small nucleolar RNAs in Saccharomyces cerevisiae (English)

1 reference

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5 January 2020

main subject

Saccharomyces cerevisiae

1 reference

based on heuristic

inferred from title

author

John L. Woolford, Jr.

7

1 reference

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5 January 2020

Denis Lafontaine

9

1 reference

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5 January 2020

8

Anita H Corbett

1 reference

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5 January 2020

author name string

Hui Qiu

1

1 reference

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5 January 2020

Julia Eifert

2

1 reference

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5 January 2020

Ludivine Wacheul

3

1 reference

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5 January 2020

Marc Thiry

4

1 reference

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5 January 2020

Adam C Berger

5

1 reference

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5 January 2020

Jelena Jakovljevic

6

1 reference

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5 January 2020

Rebecca M Terns

10

1 reference

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5 January 2020

Michael P Terns

11

1 reference

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5 January 2020

language of work or name

English

0 references

publication date

31 March 2008

1 reference

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Molecular and Cellular Biology

5 January 2020

published in

1 reference

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5 January 2020

volume

28

1 reference

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5 January 2020

issue

11

1 reference

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5 January 2020

page(s)

3686-3699

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Biogenesis and intranuclear trafficking of human box C/D and H/ACA RNPs

5 January 2020

cites work

1 reference

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Noncoding RNAs of the H/ACA family

30 September 2017

1 reference

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Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs

30 September 2017

1 reference

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The structure and function of small nucleolar ribonucleoproteins

30 September 2017

1 reference

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Directional mRNA transport in eukaryotes: lessons from yeast.

30 September 2017

1 reference

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RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation

30 September 2017

1 reference

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

30 September 2017

1 reference

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Proteome survey reveals modularity of the yeast cell machinery

30 September 2017

1 reference

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RNA transport and local control of translation

30 September 2017

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CAJAL BODIES: A Long History of Discovery

30 September 2017

1 reference

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The cotranscriptional assembly of snoRNPs controls the biosynthesis of H/ACA snoRNAs in Saccharomyces cerevisiae

30 September 2017

1 reference

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Global analysis of yeast RNA processing identifies new targets of RNase III and uncovers a link between tRNA 5' end processing and tRNA splicing

30 September 2017

1 reference

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Assembly and maturation of the U3 snoRNP in the nucleoplasm in a large dynamic multiprotein complex

30 September 2017

1 reference

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PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli

30 September 2017

1 reference

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30 September 2017

Nuclear export of RNA.

1 reference

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A cotranscriptional model for 3'-end processing of the Saccharomyces cerevisiae pre-ribosomal RNA precursor.

30 September 2017

1 reference

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Coupling between snoRNP assembly and 3' processing controls box C/D snoRNA biosynthesis in yeast

30 September 2017

1 reference

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A complex pathway for 3' processing of the yeast U3 snoRNA.

30 September 2017

1 reference

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Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii

30 September 2017

1 reference

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A panoramic view of yeast noncoding RNA processing

30 September 2017

1 reference

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Sequencing and comparison of yeast species to identify genes and regulatory elements

30 September 2017

1 reference

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Naf1 p is a box H/ACA snoRNP assembly factor

30 September 2017

1 reference

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Nuclear RanGTP is not required for targeting small nucleolar RNAs to the nucleolus

30 September 2017

1 reference

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HTL1 encodes a novel factor that interacts with the RSC chromatin remodeling complex in Saccharomyces cerevisiae

30 September 2017

1 reference

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Determinants of the interaction of the spinal muscular atrophy disease protein SMN with the dimethylarginine-modified box H/ACA small nucleolar ribonucleoprotein GAR1

30 September 2017

1 reference

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Naf1p, an essential nucleoplasmic factor specifically required for accumulation of box H/ACA small nucleolar RNPs

30 September 2017

1 reference

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The Shq1p.Naf1p complex is required for box H/ACA small nucleolar ribonucleoprotein particle biogenesis

30 September 2017

1 reference

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Mammalian and yeast U3 snoRNPs are matured in specific and related nuclear compartments

30 September 2017

1 reference

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Hypermethylation of the cap structure of both yeast snRNAs and snoRNAs requires a conserved methyltransferase that is localized to the nucleolus

30 September 2017

1 reference

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Pag1p, a novel protein associated with protein kinase Cbk1p, is required for cell morphogenesis and proliferation in Saccharomyces cerevisiae

30 September 2017

1 reference

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Functional organization of the yeast proteome by systematic analysis of protein complexes

30 September 2017

1 reference

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Composition and functional characterization of the yeast spliceosomal penta-snRNP.

30 September 2017

1 reference

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Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells

30 September 2017

1 reference

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A well-connected and conserved nucleoplasmic helicase is required for production of box C/D and H/ACA snoRNAs and localization of snoRNP proteins.

30 September 2017

1 reference

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Box C/D small nucleolar RNA trafficking involves small nucleolar RNP proteins, nucleolar factors and a novel nuclear domain

30 September 2017

1 reference

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Direct interaction of the spinal muscular atrophy disease protein SMN with the small nucleolar RNA-associated protein fibrillarin

30 September 2017

1 reference

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The survival of motor neurons (SMN) protein interacts with the snoRNP proteins fibrillarin and GAR1

30 September 2017

1 reference

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Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p.

30 September 2017

1 reference

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The yeast hnRNP-Like proteins Yra1p and Yra2p participate in mRNA export through interaction with Mex67p

30 September 2017

1 reference

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A comprehensive two-hybrid analysis to explore the yeast protein interactome

30 September 2017

1 reference

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A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP

30 September 2017

1 reference

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Cajal bodies: the first 100 years

30 September 2017

1 reference

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Precursors to the U3 small nucleolar RNA lack small nucleolar RNP proteins but are stabilized by La binding.

30 September 2017

1 reference

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Box C/D snoRNA-associated proteins: two pairs of evolutionarily ancient proteins and possible links to replication and transcription

30 September 2017

1 reference

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Yra1p, a conserved nuclear RNA-binding protein, interacts directly with Mex67p and is required for mRNA export

30 September 2017

1 reference

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Conserved composition of mammalian box H/ACA and box C/D small nucleolar ribonucleoprotein particles and their interaction with the common factor Nopp140

30 September 2017

1 reference

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Human Nop5/Nop58 is a component common to the box C/D small nucleolar ribonucleoproteins

30 September 2017

1 reference

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Box H and box ACA are nucleolar localization elements of U17 small nucleolar RNA.

30 September 2017

1 reference

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Nucleolar localization signals of box H/ACA small nucleolar RNAs

30 September 2017

1 reference

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Role of the box C/D motif in localization of small nucleolar RNAs to coiled bodies and nucleoli

30 September 2017

1 reference

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Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability

30 September 2017

1 reference

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Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure.

30 September 2017

1 reference

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Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs

30 September 2017

1 reference

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Nucleolar localization elements of Xenopus laevis U3 small nucleolar RNA.

30 September 2017

1 reference

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Nucleolar localization elements in U8 snoRNA differ from sequences required for rRNA processing

30 September 2017

1 reference

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The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization

30 September 2017

1 reference

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The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase

30 September 2017

1 reference

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Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis

30 September 2017

1 reference

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The yeast nucleolar protein Nop4p contains four RNA recognition motifs necessary for ribosome biogenesis.

30 September 2017

1 reference

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Interaction between the small GTPase Ran/Gsp1p and Ntf2p is required for nuclear transport

30 September 2017

1 reference

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Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs

30 September 2017

1 reference

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Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA

30 September 2017

1 reference

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YRA1, an essential Saccharomyces cerevisiae gene, encodes a novel nuclear protein with RNA annealing activity

30 September 2017

1 reference

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In vitro studies of the Prp9.Prp11.Prp21 complex indicate a pathway for U2 small nuclear ribonucleoprotein activation.

30 September 2017

1 reference

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A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus

30 September 2017

1 reference

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Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides

30 September 2017

1 reference

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Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs

30 September 2017

1 reference

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Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs

30 September 2017

1 reference

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Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis

30 September 2017

1 reference

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The Saccharomyces cerevisiae PRP21 gene product is an integral component of the prespliceosome

30 September 2017

1 reference

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Molecular cloning and sequence analysis of U3 snoRNA-associated mouse fibrillarin

30 September 2017

1 reference

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Continued functioning of the secretory pathway is essential for ribosome synthesis

30 September 2017

1 reference

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Interactions between highly conserved U2 small nuclear RNA structures and Prp5p, Prp9p, Prp11p, and Prp21p proteins are required to ensure integrity of the U2 small nuclear ribonucleoprotein in Saccharomyces cerevisiae

30 September 2017

1 reference

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Synthetic lethality with fibrillarin identifies NOP77p, a nucleolar protein required for pre-rRNA processing and modification

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

The yeast NOP4 gene product is an essential nucleolar protein required for pre-rRNA processing and accumulation of 60S ribosomal subunits.

30 September 2017

1 reference

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Cloning of Saccharomyces cerevisiae DNA Replication Genes: Isolation of the CDC8 Gene and Two Genes That Compensate for the cdc8-1 Mutation

30 September 2017

1 reference

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Defective plasma membrane assembly in yeast secretory mutants

30 September 2017

1 reference

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A Saccharomyces cerevisiae genomic plasmid bank based on a centromere-containing shuttle vector

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Identification and characterization of a yeast nucleolar protein that is similar to a rat liver nucleolar protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

SnR30: a new, essential small nuclear RNA from Saccharomyces cerevisiae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

A yeast nucleolar protein related to mammalian fibrillarin is associated with small nucleolar RNA and is essential for viability

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

The Saccharomyces cerevisiae SEC14 gene encodes a cytosolic factor that is required for transport of secretory proteins from the yeast Golgi complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

An essential role for a phospholipid transfer protein in yeast Golgi function

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

SSB-1 of the yeast Saccharomyces cerevisiae is a nucleolar-specific, silver-binding protein that is associated with the snR10 and snR11 small nuclear RNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

The small nucleolar RNP protein NOP1 (fibrillarin) is required for pre-rRNA processing in yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Isolation and characterization of RAT1: an essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

NSR1 is required for pre-rRNA processing and for the proper maintenance of steady-state levels of ribosomal subunits

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

The HTL1 gene (YCR020W-b) of Saccharomyces cerevisiae is necessary for growth at 37 degrees C, and for the conservation of chromosome stability and fertility

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Multiple conserved segments of E1 small nucleolar RNA are involved in the formation of a ribonucleoprotein particle in frog oocytes

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Nucleolin functions in the first step of ribosomal RNA processing.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Cotranscriptional recognition of human intronic box H/ACA snoRNAs occurs in a splicing-independent manner.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Biochemical and genetic characterization of Yra1p in budding yeast

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

The centennial of the Cajal body.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Exclusive interaction of the 15.5 kD protein with the terminal box C/D motif of a methylation guide snoRNP.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Characterization of the sequences encoding for Xenopus laevis box C/D snoRNP Nop56 protein

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Fibrillarin binds directly and specifically to U16 box C/D snoRNA.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423305

Splicing-dependent and -independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells

5 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18378690

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/MCB.01115-07

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18378690%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18378690%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

1 reference