The C-terminal zinc finger of UvrA does not bind DNA directly but regulates damage-specific DNA binding (Q36675936)

15 August 2017

The C-terminal zinc finger of UvrA does not bind DNA directly but regulates damage-specific DNA binding (English)

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15 August 2017

4

Rachelle J Bienstock

1 reference

15 August 2017

Deborah L Croteau

1

1 reference

15 August 2017

Matthew J DellaVecchia

2

1 reference

15 August 2017

Hong Wang

3

1 reference

15 August 2017

Mark A Melton

5

1 reference

15 August 2017

Bennett Van Houten

6

1 reference

15 August 2017

language of work or name

English

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publication date

7 July 2006

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Journal of Biological Chemistry

15 August 2017

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15 August 2017

281

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15 August 2017

36

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15 August 2017

26370-26381

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describes a project that uses

15 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2396232/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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ATP hydrolysis is required to reset the ATP-binding cassette dimer into the resting-state conformation

30 September 2017

1 reference

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'Close-fitting sleeves': DNA damage recognition by the UvrABC nuclease system

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Analyzing the handoff of DNA from UvrA to UvrB utilizing DNA-protein photoaffinity labeling

30 September 2017

1 reference

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Interactions between UvrA and UvrB: the role of UvrB's domain 2 in nucleotide excision repair

30 September 2017

1 reference

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Molecular mechanisms of mammalian DNA repair and the DNA damage checkpoints

30 September 2017

1 reference

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Thermodynamic cooperativity and kinetic proofreading in DNA damage recognition and repair

30 September 2017

1 reference

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The Pfam protein families database

30 September 2017

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The crystal structure of the yeast Hsp40 Ydj1 complexed with its peptide substrate

30 September 2017

1 reference

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A Tweezers-like Motion of the ATP-Binding Cassette Dimer in an ABC Transport Cycle

30 September 2017

1 reference

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Zinc fingers--folds for many occasions

30 September 2017

1 reference

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ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Clue to damage recognition by UvrB: residues in the beta-hairpin structure prevent binding to non-damaged DNA.

30 September 2017

1 reference

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Crystal structure of MalK, the ATPase subunit of the trehalose/maltose ABC transporter of the archaeon Thermococcus litoralis

30 September 2017

1 reference

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Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily

30 September 2017

1 reference

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Damage recognition in nucleotide excision repair of DNA.

30 September 2017

1 reference

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Crystal structure of the ATP-binding subunit of an ABC transporter

30 September 2017

1 reference

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Identification of a damaged-DNA binding domain of the XPA protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Mutations in the helix-turn-helix motif of the Escherichia coli UvrA protein eliminate its specificity for UV-damaged DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

The dissociation of ATP from hsp70 of Saccharomyces cerevisiae is stimulated by both Ydj1p and peptide substrates

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

The XPA protein is a zinc metalloprotein with an ability to recognize various kinds of DNA damage

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

The (A)BC excinuclease of Escherichia coli has only the UvrB and UvrC subunits in the incision complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Characterization of YDJ1: a yeast homologue of the bacterial dnaJ protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Both ATPase sites of Escherichia coli UvrA have functional roles in nucleotide excision repair

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Isolation and characterization of functional domains of UvrA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Mutational analysis of the structure and function of the xeroderma pigmentosum group A complementing protein. Identification of essential domains for nuclear localization and DNA excision repair

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Automated annotation of microbial proteomes in SWISS-PROT.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

A mutational study of the C-terminal zinc-finger motif of the Escherichia coli UvrA protein.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Deletion mutagenesis of the Escherichia coli UvrA protein localizes domains for DNA binding, damage recognition, and protein-protein interactions

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Dimerization of Escherichia coli UvrA and its binding to undamaged and ultraviolet light damaged DNA

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Site-specific mutagenesis of conserved residues within Walker A and B sequences of Escherichia coli UvrA protein

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Active site of (A)BC excinuclease. II. Binding, bending, and catalysis mutants of UvrB reveal a direct role in 3' and an indirect role in 5' incision

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Effect of C-terminal 44 amino acids deletion on activity of Haemophilus influenzae UvrA protein.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Stress-induced aggregation profiles of GST-alpha-synuclein fusion proteins: role of the C-terminal acidic tail of alpha-synuclein in protein thermosolubility and stability

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Comparative analysis of binding of human damaged DNA-binding protein (XPE) and Escherichia coli damage recognition protein (UvrA) to the major ultraviolet photoproducts: T[c,s]T, T[t,s]T, T[6-4]T, and T[Dewar]T.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

The multiple roles for ATP in the Escherichia coli UvrABC endonuclease-catalyzed incision reaction.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Helicase motifs V and VI of the Escherichia coli UvrB protein of the UvrABC endonuclease are essential for the formation of the preincision complex.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

The first zinc-binding domain of UvrA is not essential for UvrABC-mediated DNA excision repair.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Domainal evolution of a prokaryotic DNA repair protein and its relationship to active-transport proteins.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396232

Quick-change pathogens gain an evolutionary edge.

20 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M603093200

Evidence from extended X-ray absorption fine structure and site-specific mutagenesis for zinc fingers in UvrA protein of Escherichia coli

21 January 2018

1 reference

12 December 2020

Role of the protein chaperone YDJ1 in establishing Hsp90-mediated signal transduction pathways

1 reference

12 December 2020

The galvanization of biology: a growing appreciation for the roles of zinc

1 reference

12 December 2020

The β-Hairpin Motif of UvrB Is Essential for DNA Binding, Damage Processing, and UvrC-mediated Incisions

1 reference

12 December 2020

Dissection of the Sequence Specificity of the Holliday Junction Endonuclease CCE1†

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M603093200

1 reference

15 August 2017

1 reference

15 August 2017

1 reference