Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome (Q36672730)

15 August 2017

Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome (English)

1 reference

15 August 2017

Shewanella oneidensis

object named as

Shewanella oneidensis

1 reference

1

1 reference

15 August 2017

Lee Ann McCue

4

0 references

Mary S Lipton

series ordinal

5

object named as

Mary S Lipton

1 reference

15 August 2017

3

Angela D Norbeck

1 reference

15 August 2017

Timothy S Carlson

2

1 reference

PMCID

2394961

15 August 2017

language of work or name

English

0 references

publication date

31 March 2008

1 reference

Applied and Environmental Microbiology

15 August 2017

1 reference

15 August 2017

74

1 reference

15 August 2017

10

1 reference

15 August 2017

3257-3265

1 reference

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Insertion sequences in prokaryotic genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Recoding in bacteriophages and bacterial IS elements.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

ISfinder: the reference centre for bacterial insertion sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Recognizing the pseudogenes in bacterial genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Sfold web server for statistical folding and rational design of nucleic acids

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Reannotation of Shewanella oneidensis Genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Effects of ISSo2 insertions in structural and regulatory genes of the trimethylamine oxide reductase of Shewanella oneidensis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Shewanella denitrificans sp. nov., a vigorously denitrifying bacterium isolated from the oxic-anoxic interface of the Gotland Deep in the central Baltic Sea

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Transposable elements and the evolution of genome size in eukaryotes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

The IntI-like tyrosine recombinase of Shewanella oneidensis is active as an integron integrase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Growth of the facultative anaerobe Shewanella putrefaciens by elemental sulfur reduction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Artemis: sequence visualization and annotation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

T-Coffee: A novel method for fast and accurate multiple sequence alignment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Basic local alignment search tool

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Origins of the mobile gene cassettes found in integrons

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Identification and analysis of a highly conserved chemotaxis gene cluster in Shewanella species.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Reporting protein identification data: the next generation of guidelines.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394961

Application of Peptide LC Retention Time Information in a Discriminant Function for Peptide Identification by Tandem Mass Spectrometry

20 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18378659

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18378659

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

VCR repetitive sequence elements in the Vibrio cholerae chromosome constitute a mega-integron

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18378659

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/AEM.02720-07

1 reference

15 August 2017

1 reference

15 August 2017

1 reference

PMCID

2394961