Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)). (Q36605575)

15 August 2017

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)). (English)

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Alla Lapidus

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Hans-Peter Klenk

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Hans-Peter Klenk

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Tijana Glavina Del Rio

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Tijana Glavina Del Rio

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Roxanne Tapia

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Roxanne Tapia

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Philip Hugenholtz

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Philip Hugenholtz

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Tanja Woyke

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Tanja Woyke

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Sam Pitluck

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Sam Pitluck

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Victor Markowitz

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Amrita Pati

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Jan-Fang Cheng

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PMCID

3570806

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Konstantinos Mavromatis

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Konstantinos Mavromatis

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Krishna Palaniappan

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Matt Nolan

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Susan Lucas

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Amy Chen

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Hope Tice

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John C Detter

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Manfred Rohde

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Ioanna Pagani

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Brittany Held

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Konstantinos Liolios

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Cliff Han

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James Bristow

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Lynne A Goodwin

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Natalia Mikhailova

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Brian J Tindall

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Thomas Riedel

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1 October 2012

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Standards in genomic sciences

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107-119

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https://scigraph.springernature.com/pub.10.4056/sigs.3216895

15 August 2017

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30 September 2017

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Excitation energy-transfer and the relative orientation of retinal and carotenoid in xanthorhodopsin

30 September 2017

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30 September 2017

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Xanthorhodopsin: Proton pump with a carotenoid antenna

30 September 2017

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Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host

30 September 2017

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Light-powering Escherichia coli with proteorhodopsin

30 September 2017

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Gillisia myxillae sp. nov., a novel member of the family Flavobacteriaceae, isolated from the marine sponge Myxilla incrustans

30 September 2017

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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

30 September 2017

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The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea

30 September 2017

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Dokdonia donghaensis gen. nov., sp. nov., isolated from sea water

30 September 2017

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Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola

30 September 2017

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The nomenclatural types of the orders Acholeplasmatales, Halanaerobiales, Halobacteriales, Methanobacteriales, Methanococcales, Methanomicrobiales, Planctomycetales, Prochlorales, ...

30 September 2017

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Gillisia mitskevichiae sp. nov., a novel bacterium of the family Flavobacteriaceae, isolated from sea water

30 September 2017

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30 September 2017

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30 September 2017

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Gillisia limnaea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from a microbial mat in Lake Fryxell, Antarctica.

30 September 2017

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30 September 2017

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Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family

30 September 2017

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Proton transfers in the photochemical reaction cycle of proteorhodopsin

30 September 2017

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30 September 2017

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Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds

30 September 2017

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Bacterial gliding motility: multiple mechanisms for cell movement over surfaces.

30 September 2017

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Proteorhodopsin phototrophy in the ocean.

30 September 2017

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Retinylidene proteins: structures and functions from archaea to humans.

30 September 2017

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Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

30 September 2017

1 reference

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Gene ontology: tool for the unification of biology

30 September 2017

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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570806

Dynamics of bacterial community composition and activity during a mesocosm diatom bloom

30 September 2017

1 reference

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Rhodopsin-like protein from the purple membrane of Halobacterium halobium

30 September 2017

1 reference

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Basic local alignment search tool

30 September 2017

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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

30 September 2017

1 reference

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Draft genome sequence of Gillisia sp. strain CBA3202, a novel member of the genus Gillisia, which belongs to the family Flavobacteriaceae

30 September 2017

1 reference

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Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

28 June 2018

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Reclassification of the three species of the genus Krokinobacter into the genus Dokdonia as Dokdonia genika comb. nov., Dokdonia diaphoros comb. nov. and Dokdonia eikasta comb. nov., and emended description of the genus Dokdonia Yoon et al. 2005.

28 June 2018

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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

20 September 2018

1 reference

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How many bootstrap replicates are necessary?

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570806

Xanthorhodopsin: a proton pump with a light-harvesting carotenoid antenna.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570806

Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570806

Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570806

Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 40

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570806

Cutting a Gordian Knot: Emended Classification and Description of the Genus Flavobacterium, Emended Description of the Family Flavobacteriaceae, and Proposal of Flavobacterium hydatis nom. nov. (Basonym, Cytophaga aquatilis Strohl and Tait 1978)

20 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.4056%2FSIGS.3216895

Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 41

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.4056%2FSIGS.3216895

21 January 2018

Identifiers

DOI

10.4056/SIGS.3216895

1 reference

PMCID

3570806

Dimensions Publication ID

15 August 2017

0 references

1 reference

15 August 2017

1 reference

PMCID

3570806