Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites (Q36563975)

14 August 2017

Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites (English)

1 reference

14 August 2017

0 references

Norosoa J Razafinarivo

1

1 reference

14 August 2017

Romain Guyot

2

1 reference

14 August 2017

Aaron P Davis

3

1 reference

14 August 2017

Emmanuel Couturon

4

1 reference

14 August 2017

Serge Hamon

5

1 reference

14 August 2017

Dominique Crouzillat

6

1 reference

14 August 2017

Michel Rigoreau

7

1 reference

14 August 2017

Christine Dubreuil-Tranchant

8

1 reference

14 August 2017

Valerie Poncet

9

1 reference

14 August 2017

Alexandre De Kochko

10

1 reference

14 August 2017

Jean-Jacques Rakotomalala

11

1 reference

14 August 2017

Perla Hamon

12

1 reference

14 August 2017

language of work or name

English

0 references

publication date

28 December 2012

1 reference

14 August 2017

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14 August 2017

111

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14 August 2017

2

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14 August 2017

229-248

1 reference

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

A survey of mangiferin and hydroxycinnamic acid ester accumulation in coffee (Coffea) leaves: biological implications and uses

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Searching for the relatives of Coffea (Rubiaceae, Ixoroideae): the circumscription and phylogeny of Coffeeae based on plastid sequence data and morphology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

genepop'007: a complete re-implementation of the genepop software for Windows and Linux

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Insights into the biogeographical history of the Lower Guinea Forest Domain: evidence for the role of refugia in the intraspecific differentiation of Aucoumea klaineana

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Current genetic differentiation of Coffea canephora Pierre ex A. Froehn in the Guineo-Congolian African zone: cumulative impact of ancient climatic changes and recent human activities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Arlequin (version 3.0): an integrated software package for population genetics data analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Development of new genomic microsatellite markers from robusta coffee (Coffea canephora Pierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Diversity in coffee assessed with SSR markers: structure of the genus Coffea and perspectives for breeding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Development of genomic microsatellite markers in Coffea canephora and their transferability to other coffee species

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Characterization of Coffea chloroplast microsatellites and evidence for the recent divergence of C. arabica and C. eugenioides chloroplast genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Towards a Phylogeny for Coffea (Rubiaceae): identifying well-supported lineages based on nuclear and plastid DNA sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Population structure and eigenanalysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Evolution of genome size in Brassicaceae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Genome evolution in the genus Sorghum (Poaceae)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Simple sequence repeat diversity in diploid and tetraploid Coffea species

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Genome Size Variations in Diploid African Coffea Species

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

The origin of cultivated Coffea arabica L. varieties revealed by AFLP and SSR markers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Characterization of microsatellite loci in Coffea arabica and related coffee species

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Inference of population structure using multilocus genotype data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

A microsatellite-based multilocus phylogeny of the Drosophila melanogaster species complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Phylogenetic analysis of chloroplast DNA variation in Coffea L.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Microsatellite evolution--a reciprocal study of repeat lengths at homologous loci in cattle and sheep.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

The neighbor-joining method: a new method for reconstructing phylogenetic trees

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

SSR cross-amplification and variation within coffee trees (Coffea spp.).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Determination of relatedness between individuals using DNA fingerprinting

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Microsatellite variation suggests a recent fine-scale population structure of Drosophila sechellia, a species endemic of the Seychelles archipelago

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Evolution of genome size in the angiosperms.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae).

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Landscape genetics of the key African acacia species Senegalia mellifera (Vahl)- the importance of the Kenyan Rift Valley

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Effectiveness of the fatty acid and sterol composition of seeds for the chemotaxonomy of Coffea subgenus Coffea

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Genetic markers: how accurate can genetic data be?

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

PowerMarker: an integrated analysis environment for genetic marker analysis

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

A multilocus microsatellite phylogeny of the Drosophila virilis group.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

A simple new method for estimating null allele frequency from heterozygote deficiency.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3555535

Coffee : a monograph of the economic species of the genus Coffea L

21 September 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCS283

Six species of Psilanthus transferred to Coffea (Coffeeae, Rubiaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCS283

Psilanthus mannii, the type species of Psilanthus, transferred to Coffea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCS283

New species of Coffea L. (Rubiaceae) from Madagascar

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCS283

A taxonomic revision of the baracoffea alliance: nine remarkable Coffea species from western Madagascar

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCS283

An annotated taxonomic conspectus of the genus Coffea (Rubiaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCS283

Coffeatoshii sp. nov. (Rubiaceae) from Madagascar

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCS283

genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCS283

Phylogenetic analysis of the tribe Bovini using microsatellites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCS283

AFLP and SSR polymorphism in a Coffea interspecific backcross progeny [( C. heterocalyx x C. canephora) x C. canephora]

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23275631

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Can microsatellites be used to infer phylogenies? Evidence from population affinities of the Western Canary Island lizard (Gallotia galloti)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23275631

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

GENEPOP (Version 1.2): Population Genetics Software for Exact Tests and Ecumenicism

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/OXFORDJOURNALS.JHERED.A111573

micro-checker: software for identifying and correcting genotyping errors in microsatellite data

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1111/J.1471-8286.2004.00684.X

Identifiers

DOI

10.1093/AOB/MCS283

1 reference

14 August 2017

1 reference

14 August 2017

1 reference