Measures of residue density in protein structures (Q36543170)

14 August 2017

Measures of residue density in protein structures (English)

1 reference

14 August 2017

F Baud

1

1 reference

PMCID

22960

14 August 2017

S Karlin

series ordinal

2

1 reference

PMCID

22960

14 August 2017

language of work or name

English

0 references

publication date

1 October 1999

1 reference

Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

1 reference

14 August 2017

96

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14 August 2017

12494-12499

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14 August 2017

22

1 reference

Atom density in protein structures

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Ideal architecture of residue packing and its observation in protein structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

CATH--a hierarchic classification of protein domain structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Coordination geometry of nonbonded residues in globular proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

From Levinthal to pathways to funnels

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Delaunay tessellation of proteins: four body nearest-neighbor propensities of amino acid residues

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Characterizations of diverse residue clusters in protein three-dimensional structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

How are close residues of protein structures distributed in primary sequence?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Cation-pi interactions in chemistry and biology: a new view of benzene, Phe, Tyr, and Trp

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Measuring residue associations in protein structures. Possible implications for protein folding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Enlarged representative set of protein structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Parser for protein folding units

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Aromatic-aromatic interaction: a mechanism of protein structure stabilization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Is there a single pathway for the folding of a polypeptide chain?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

The mechanism of alpha-helix formation by peptides

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Correlation analysis of amino acid usage in protein classes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Discovery of local packing motifs in protein structures.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Heterogeneity of packing: structural approach

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Recombination of protein domains facilitated by co-translational folding in eukaryotes.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Biased amino acid distributions in regions of the T cell receptors and MHC molecules potentially involved in their association.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22960

Extended metal environments of cytochrome c oxidase structures

28 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12494

Heat shock protein 70 family: multiple sequence comparisons, function, and evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12494

A symmetric-iterated multiple alignment of protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12494

Benzene Forms Hydrogen Bonds with Water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12494

On the nature of antibody combining sites: Unusual structural features that may confer on these sites an enhanced capacity for binding ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12494

Protein folding and protein evolution: common folding nucleus in different subfamilies of c-type cytochromes?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12494

21 January 2018

Identifiers

DOI

10.1073/PNAS.96.22.12494

1 reference

14 August 2017

0 references

1 reference

14 August 2017

1 reference

PMCID

22960