Monitoring RNA transcription in real time by using surface plasmon resonance (Q36491194)

14 August 2017

Monitoring RNA transcription in real time by using surface plasmon resonance (English)

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surface plasmon resonance

14 August 2017

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Sandra J Greive

1

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14 August 2017

Steven E Weitzel

2

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14 August 2017

Jim P Goodarzi

3

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14 August 2017

Lisa J Main

4

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14 August 2017

Zvi Pasman

5

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14 August 2017

Peter H von Hippel

6

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14 August 2017

language of work or name

English

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publication date

25 February 2008

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Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

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14 August 2017

105

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14 August 2017

9

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14 August 2017

3315-3320

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describes a project that uses

14 August 2017

surface plasmon resonance

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Direct spectroscopic study of reconstituted transcription complexes reveals that intrinsic termination is driven primarily by thermodynamic destabilization of the nucleic acid framework

inferred from title

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Pause sites promote transcriptional termination of mammalian RNA polymerase II

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Thinking quantitatively about transcriptional regulation.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Backtracking by single RNA polymerase molecules observed at near-base-pair resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Transcription elongation and human disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Nonequilibrium mechanism of transcription termination from observations of single RNA polymerase molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Transcriptional pause, arrest and termination sites for RNA polymerase II in mammalian N- and c-myc genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

The mechanism of intrinsic transcription termination.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Extending the range of rate constants available from BIACORE: interpreting mass transport-influenced binding data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Specificity mechanisms in the control of transcription

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Control of rRNA transcription in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Transcription termination at intrinsic terminators: the role of the RNA hairpin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Transcription by single molecules of RNA polymerase observed by light microscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Termination efficiency at rho-dependent terminators depends on kinetic coupling between RNA polymerase and rho

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Transcript elongation and termination are competitive kinetic processes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: differences in the binding behavior of core and holoenzyme

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

A quantitative assay for bacterial RNA polymerases

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Regulation of the elongation-termination decision at intrinsic terminators by antitermination protein N of phage lambda

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Basic mechanisms of transcript elongation and its regulation

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Multiple interactions stabilize a single paused transcription intermediate in which hairpin to 3' end spacing distinguishes pause and termination pathways.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

The binding of RNA polymerase to DNA

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Parameters affecting transcription termination by Escherichia coli RNA. II. Construction and analysis of hybrid terminators

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Stability of Escherichia coli transcription complexes near an intrinsic terminator.

28 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712074105

Cooperation between RNA polymerase molecules in transcription elongation

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.0712074105

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712074105

Transcription termination: primary intermediates and secondary adducts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712074105

Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712074105

Transcription termination in Escherichia coli. Measurement of the rate of enzyme release from Rho-independent terminators

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712074105

Transcription processivity: protein-DNA interactions holding together the elongation complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712074105

Active Escherichia coli transcription elongation complexes are functionally homogeneous.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712074105

Control of intrinsic transcription termination by N and NusA: the basic mechanisms

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2265150

Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate

21 October 2018

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12 December 2020

Real time in vitro analysis of transcription by RNA polymerase on immobilized DNA fibres

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12 December 2020

Reaction pathways in transcript elongation

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12 December 2020

Pausing and termination of transcription within the early region of bacteriophage T7 DNA in vitro

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12 December 2020

Identifiers

DOI

10.1073/PNAS.0712074105

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14 August 2017

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14 August 2017

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