Regulators of genetic risk of breast cancer identified by integrative network analysis (Q36419747)

14 August 2017

Regulators of genetic risk of breast cancer identified by integrative network analysis (English)

1 reference

14 August 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Ines de Santiago

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Theresa E Hickey

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Edith Ross

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Wayne D Tilley

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Florian Markowetz

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

10

Kerstin B Meyer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

author name string

Thomas M Campbell

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Courtney Vaughn

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Bruce A J Ponder

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

language of work or name

English

0 references

publication date

30 November 2015

1 reference

14 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

volume

48

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

12-21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

8 June 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4697365

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/ng.3458

0 references

cites work

From candidate gene studies to GWAS and post-GWAS analyses in breast cancer

1 reference

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Luminal progenitors restrict their lineage potential during mammary gland development

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

limma powers differential expression analyses for RNA-sequencing and microarray studies

30 September 2017

1 reference

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COSMIC: exploring the world's knowledge of somatic mutations in human cancer

30 September 2017

1 reference

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TRIM29 suppresses TWIST1 and invasive breast cancer behavior.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

YB-1 transforms human mammary epithelial cells through chromatin remodeling leading to the development of basal-like breast cancer

30 September 2017

1 reference

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Network analysis of GWAS data

30 September 2017

1 reference

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Notch3 marks clonogenic mammary luminal progenitor cells in vivo.

30 September 2017

1 reference

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Master regulators of FGFR2 signalling and breast cancer risk

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

MiR-155-mediated loss of C/EBPβ shifts the TGF-β response from growth inhibition to epithelial-mesenchymal transition, invasion and metastasis in breast cancer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Large-scale genotyping identifies 41 new loci associated with breast cancer risk

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

A comprehensive nuclear receptor network for breast cancer cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Integrative eQTL-based analyses reveal the biology of breast cancer risk loci

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

ELF5 suppresses estrogen sensitivity and underpins the acquisition of antiestrogen resistance in luminal breast cancer.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Neural crest transcription factor Sox10 is preferentially expressed in triple-negative and metaplastic breast carcinomas.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Phenotypic and functional characterisation of the luminal cell hierarchy of the mammary gland

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Comprehensive molecular portraits of human breast tumours

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Leveraging models of cell regulation and GWAS data in integrative network-based association studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Minireview: The androgen receptor in breast tissues: growth inhibitor, tumor suppressor, oncogene?

30 September 2017

1 reference

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Essential gene profiles in breast, pancreatic, and ovarian cancer cells.

30 September 2017

1 reference

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RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations.

30 September 2017

1 reference

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The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

30 September 2017

1 reference

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Matrix eQTL: ultra fast eQTL analysis via large matrix operations

30 September 2017

1 reference

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FOXA1 represses the molecular phenotype of basal breast cancer cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Unraveling the regulatory mechanisms underlying tissue-dependent genetic variation of gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Most random gene expression signatures are significantly associated with breast cancer outcome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Maintenance of hormone responsiveness in luminal breast cancers by suppression of Notch

30 September 2017

1 reference

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NFIB is a potential target for estrogen receptor-negative breast cancers

30 September 2017

1 reference

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Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state.

30 September 2017

1 reference

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Relationships of ESR1 and XBP1 expression in human breast carcinoma and stromal cells isolated by laser capture microdissection compared to intact breast cancer tissue

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Androgen receptor driven transcription in molecular apocrine breast cancer is mediated by FoxA1.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

FOXA1 is a key determinant of estrogen receptor function and endocrine response

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Systems biology and genomics of breast cancer

30 September 2017

1 reference

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Transcriptome analyses of mouse and human mammary cell subpopulations reveal multiple conserved genes and pathways

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Breast and prostate cancer: more similar than different.

30 September 2017

1 reference

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Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

The transcriptional network for mesenchymal transformation of brain tumours.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

The Ets transcription factor Elf5 specifies mammary alveolar cell fate

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Statistical power of expression quantitative trait loci for mapping of complex trait loci in natural populations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Reverse engineering of regulatory networks in human B cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Bioconductor: open software development for computational biology and bioinformatics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

C/EBPbeta, but not C/EBPalpha, is essential for ductal morphogenesis, lobuloalveolar proliferation, and functional differentiation in the mouse mammary gland.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

BRCA1 basal-like breast cancers originate from luminal epithelial progenitors and not from basal stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

Gene expression profiling shows medullary breast cancer is a subgroup of basal breast cancers

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4697365

The control of the false discovery rate in multiple testing under dependency

21 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.3458

Distinct stem cells contribute to mammary gland development and maintenance

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.3458

From expression QTLs to personalized transcriptomics

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26618344

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NG.3458

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26618344%20AND%20SRC:MED&resulttype=core&format=json