OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations (Q36375842)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28521726%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

title

OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28521726%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

corrigendum / erratum

Erratum to: OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations

1 reference

10.1186/S12864-017-3849-5

Crossref

DOI

12 July 2019

http://api.crossref.org/works?select=update-to&filter=doi:10.1186/S12864-017-3849-5

author

Steven Kelly

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28521726%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

author name string

Michael P Dunne

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28521726%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

language of work or name

English

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publication date

18 May 2017

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20 March 2020

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20 March 2020

volume

18

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20 March 2020

issue

1

1 reference

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20 March 2020

page(s)

390

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OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

20 March 2020

cites work

1 reference

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

30 September 2017

1 reference

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HISAT: a fast spliced aligner with low memory requirements

30 September 2017

1 reference

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Extensive error in the number of genes inferred from draft genome assemblies

30 September 2017

1 reference

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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

30 September 2017

1 reference

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Automated alignment-based curation of gene models in filamentous fungi

30 September 2017

1 reference

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

30 September 2017

1 reference

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Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks

30 September 2017

1 reference

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A beginner's guide to eukaryotic genome annotation

30 September 2017

1 reference

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Phytozome: a comparative platform for green plant genomics

30 September 2017

1 reference

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PomBase: a comprehensive online resource for fission yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

HMMER web server: interactive sequence similarity searching

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

The sequence read archive

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

BEDTools: a flexible suite of utilities for comparing genomic features

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

Comparative genomics of protoploid Saccharomycetaceae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

Promiscuous DNA in the nuclear genomes of hemiascomycetous yeasts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

Genome evolution in yeasts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

The genome sequence of Schizosaccharomyces pombe

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

Ebola threatens a way of life

21 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-017-3771-X

Technology: The $1,000 genome

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5437544

10.1186/S12864-017-3771-X

5 December 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28521726%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28521726%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference