Complementary strand relocation may play vital roles in RecA-based homology recognition (Q36368768)

13 August 2017

Complementary strand relocation may play vital roles in RecA-based homology recognition (English)

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13 August 2017

Alexandra Peacock-Villada

1

1 reference

13 August 2017

Darren Yang

2

1 reference

13 August 2017

Claudia Danilowicz

3

1 reference

13 August 2017

Efraim Feinstein

4

1 reference

13 August 2017

Nolan Pollock

5

1 reference

13 August 2017

Sarah McShan

6

1 reference

13 August 2017

Vincent Coljee

7

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13 August 2017

Mara Prentiss

8

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13 August 2017

language of work or name

English

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publication date

31 August 2012

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13 August 2017

Nucleic Acids Research

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13 August 2017

40

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13 August 2017

20

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13 August 2017

10441-10451

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Creative Commons Attribution-NonCommercial 3.0 Unported

13 August 2017

start time

7 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Single-molecule imaging of DNA pairing by RecA reveals a three-dimensional homology search

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RecA homology search is promoted by mechanical stress along the scanned duplex DNA.

30 September 2017

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Real-time observation of strand exchange reaction with high spatiotemporal resolution

30 September 2017

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Developing single-molecule TPM experiments for direct observation of successful RecA-mediated strand exchange reaction

30 September 2017

1 reference

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Study of force induced melting of dsDNA as a function of length and conformation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Single-molecule studies of the stringency factors and rates governing the polymerization of RecA on double-stranded DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

RecA-mediated homology search as a nearly optimal signal detection system

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Caught in the act: the lifetime of synaptic intermediates during the search for homology on DNA.

30 September 2017

1 reference

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The structure of DNA overstretched from the 5'5' ends differs from the structure of DNA overstretched from the 3'3' ends.

30 September 2017

1 reference

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Demonstration that the shear force required to separate short double-stranded DNA does not increase significantly with sequence length for sequences longer than 25 base pairs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

High fidelity of RecA-catalyzed recombination: a watchdog of genetic diversity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Direct observation of individual RecA filaments assembling on single DNA molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Crystal Structures of Mycobacterium smegmatis RecA and Its Nucleotide Complexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Molecular views of recombination proteins and their control

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Structural studies on MtRecA-nucleotide complexes: insights into DNA and nucleotide binding and the structural signature of NTP recognition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Electrostatics of nanosystems: application to microtubules and the ribosome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Polymerization and mechanical properties of single RecA-DNA filaments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

RecA polymerization on double-stranded DNA by using single-molecule manipulation: the role of ATP hydrolysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

RecA binding to a single double-stranded DNA molecule: a possible role of DNA conformational fluctuations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Three mechanistic steps detected by FRET after presynaptic filament formation in homologous recombination. ATP hydrolysis required for release of oligonucleotide heteroduplex product from RecA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

VMD: visual molecular dynamics

30 September 2017

1 reference

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Kinetic Proofreading: A New Mechanism for Reducing Errors in Biosynthetic Processes Requiring High Specificity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Ability of RecA protein to promote a search for rare sequences in duplex DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Homologous recombination in Escherichia coli: dependence on substrate length and homology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

The RecA protein: structure and function

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

The synapsis event in the homologous pairing of DNAs: RecA recognizes and pairs less than one helical repeat of DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Kinetic amplification of enzyme discrimination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Evidence for the coupling of ATP hydrolysis to the final (extension) phase of RecA protein-mediated DNA strand exchange.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488227

Homologous pairing and DNA strand-exchange proteins.

28 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS769

The function of the secondary DNA-binding site of RecA protein during DNA strand exchange

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS769

Elucidating a key intermediate in homologous DNA strand exchange: structural characterization of the RecA-triple-stranded DNA complex using fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS769

Kinetic analysis of pairing and strand exchange catalyzed by RecA. Detection by fluorescence energy transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS769

Direct evaluation of a kinetic model for RecA-mediated DNA-strand exchange: the importance of nucleic acid dynamics and entropy during homologous genetic recombination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS769

Homologous recombination in real time: DNA strand exchange by RecA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS769

Mechanism of RecA-mediated homologous recombination revisited by single molecule nanomanipulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS769

Binding stoichiometry and structure of RecA-DNA complexes studied by flow linear dichroism and fluorescence spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS769

Characterization of the DNA binding activity of stable RecA-DNA complexes. Interaction between the two DNA binding sites within RecA helical filaments

21 January 2018

1 reference

12 December 2020

Tension on dsDNA bound to ssDNA-RecA filaments may play an important role in driving efficient and accurate homology recognition and strand exchange.

1 reference

12 December 2020

Stable binding of recA protein to duplex DNA. Unraveling a paradox

1 reference

12 December 2020

recA protein-promoted DNA strand exchange. Stable complexes of recA protein and single-stranded DNA formed in the presence of ATP and single-stranded DNA binding protein

1 reference

12 December 2020

The search for DNA homology does not limit stable homologous pairing promoted by RecA protein

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKS769

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

22941658

1 reference