Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid. (Q36346028)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26628723%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid (English)

1 reference

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1 March 2020

0 references

1 reference

1 reference

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3

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1 March 2020

Hassan Hashimi

5

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1 March 2020

Julius Lukeš

11

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1 March 2020

10

John M Archibald

1 reference

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1 March 2020

9

Michael W Gray

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1 March 2020

author name string

Vojtěch David

1

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1 March 2020

Pavel Flegontov

2

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1 March 2020

Goro Tanifuji

4

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1 March 2020

Maria D Logacheva

6

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1 March 2020

Shinichiro Maruyama

7

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1 March 2020

Naoko T Onodera

8

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1 March 2020

publication date

1 December 2015

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1 March 2020

1 reference

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1 March 2020

volume

6

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1 March 2020

issue

6

1 reference

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1 March 2020

page(s)

e01498-15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26628723%20AND%20SRC:MED&resulttype=core&format=json

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

1 March 2020

cites work

1 reference

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Malleable mitochondrion of Trypanosoma brucei

30 September 2017

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An arginine-glycine-rich RNA binding protein impacts the abundance of specific mRNAs in the mitochondria of Trypanosoma brucei

30 September 2017

1 reference

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Kentomonas gen. n., a new genus of endosymbiont-containing trypanosomatids of Strigomonadinae subfam. n.

30 September 2017

1 reference

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Support for the coevolution of Neoparamoeba and their endosymbionts, Perkinsela amoebae-like organisms

30 September 2017

1 reference

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Evolution of parasitism in kinetoplastid flagellates.

30 September 2017

1 reference

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Native mitochondrial RNA-binding complexes in kinetoplastid RNA editing differ in guide RNA composition

30 September 2017

1 reference

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The emerging role of RNA and DNA editing in cancer.

30 September 2017

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Mitochondrial RNA editing in trypanosomes: small RNAs in control

30 September 2017

1 reference

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RNA Editing in Plants and Its Evolution

30 September 2017

1 reference

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Kinetoplast DNA-encoded ribosomal protein S12: a possible functional link between mitochondrial RNA editing and translation in Trypanosoma brucei

30 September 2017

1 reference

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The insect-phase gRNA transcriptome in Trypanosoma brucei

30 September 2017

1 reference

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Deciphering the functions and regulation of brain-enriched A-to-I RNA editing

30 September 2017

1 reference

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

30 September 2017

1 reference

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RNA-level unscrambling of fragmented genes in Diplonema mitochondria

30 September 2017

1 reference

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Dual core processing: MRB1 is an emerging kinetoplast RNA editing complex

30 September 2017

1 reference

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Diversity and phylogeny of insect trypanosomatids: all that is hidden shall be revealed.

30 September 2017

1 reference

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Functional characterization of two paralogs that are novel RNA binding proteins influencing mitochondrial transcripts of Trypanosoma brucei

30 September 2017

1 reference

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Architecture of the trypanosome RNA editing accessory complex, MRB1.

30 September 2017

1 reference

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Fast gapped-read alignment with Bowtie 2

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Posttranscriptional recoding by RNA editing

30 September 2017

1 reference

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Enigmatic presence of mitochondrial complex I in Trypanosoma brucei bloodstream forms

30 September 2017

1 reference

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Uridine insertion/deletion editing in trypanosomes: a playground for RNA-guided information transfer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Guide RNA biogenesis involves a novel RNase III family endoribonuclease in Trypanosoma brucei

30 September 2017

1 reference

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How a neutral evolutionary ratchet can build cellular complexity

30 September 2017

1 reference

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Genomic characterization of Neoparamoeba pemaquidensis (Amoebozoa) and its kinetoplastid endosymbiont.

30 September 2017

1 reference

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Endonuclease associations with three distinct editosomes in Trypanosoma brucei

30 September 2017

1 reference

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Pentatricopeptide repeat proteins stimulate mRNA adenylation/uridylation to activate mitochondrial translation in trypanosomes

30 September 2017

1 reference

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A review of infectious gill disease in marine salmonid fish.

30 September 2017

1 reference

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Trypanosome REH1 is an RNA helicase involved with the 3'-5' polarity of multiple gRNA-guided uridine insertion/deletion RNA editing

30 September 2017

1 reference

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RET1-catalyzed uridylylation shapes the mitochondrial transcriptome in Trypanosoma brucei

30 September 2017

1 reference

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REH2 RNA helicase in kinetoplastid mitochondria: ribonucleoprotein complexes and essential motifs for unwinding and guide RNA (gRNA) binding

30 September 2017

1 reference

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Distinct and overlapping functions of MRP1/2 and RBP16 in mitochondrial RNA metabolism.

30 September 2017

1 reference

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Structure of a mitochondrial ribosome with minimal RNA

30 September 2017

1 reference

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Differential functions of two editosome exoUases in Trypanosoma brucei.

30 September 2017

1 reference

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Guide RNA-binding complex from mitochondria of trypanosomatids

30 September 2017

1 reference

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TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Trypanosoma brucei mitochondrial ribosomes: affinity purification and component identification by mass spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Structure and function of the native and recombinant mitochondrial MRP1/MRP2 complex from Trypanosoma brucei

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Mitochondrial complexes in Trypanosoma brucei: a novel complex and a unique oxidoreductase complex

30 September 2017

1 reference

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Mitochondrial DNA as a Genomic Jigsaw Puzzle

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Morphological discordance of the new trypanosomatid species phylogenetically associated with the genus crithidia

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Striped Smith-Waterman speeds database searches six times over other SIMD implementations

30 September 2017

1 reference

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Neoparamoeba branchiphila n. sp., and related species of the genus Neoparamoeba Page, 1987: morphological and molecular characterization of selected strains.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

The 3'-untranslated region of cytochrome oxidase II mRNA functions in RNA editing of African trypanosomes exclusively as a cis guide RNA.

30 September 2017

1 reference

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An updated view of kinetoplastid phylogeny using environmental sequences and a closer outgroup: proposal for a new classification of the class Kinetoplastea

30 September 2017

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Diversity and evolution of mitochondrial RNA editing systems

30 September 2017

1 reference

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Kinetoplast DNA network: evolution of an improbable structure

30 September 2017

1 reference

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Functions and mechanisms of RNA editing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Implications of novel guide RNA features for the mechanism of RNA editing in Crithidia fasciculata

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

The boundaries of partially edited transcripts are not conserved in kinetoplastids: implications for the guide RNA model of editing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Novel pattern of editing regions in mitochondrial transcripts of the cryptobiid Trypanoplasma borreli

30 September 2017

1 reference

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Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Further characterization of the extremely small mitochondrial ribosomal RNAs from trypanosomes: a detailed comparison of the 9S and 12S RNAs from Crithidia fasciculata and Trypanosoma brucei with rRNAs from other organisms

30 September 2017

1 reference

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Modification of Trypanosoma brucei mitochondrial rRNA by posttranscriptional 3' polyuridine tail formation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Trans-splicing and RNA editing of LSU rRNA in Diplonema mitochondria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Validating the identity of Paramoeba invadens, the causative agent of recurrent mass mortality of sea urchins in Nova Scotia, Canada.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

RNA editing in Trypanosoma brucei requires three different editosomes

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Incomplete editing of rps12 transcripts results in the synthesis of polymorphic polypeptides in plant mitochondria

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Editing and misediting of transcripts of the kinetoplast maxicircle G5 (ND3) cryptogene in an old laboratory strain of Leishmania tarentolae.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Generation of unexpected editing patterns in Leishmania tarentolae mitochondrial mRNAs: misediting produced by misguiding

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Complex I (NADH:ubiquinone oxidoreductase) is active in but non-essential for procyclic Trypanosoma brucei.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Substitutional editing of Heterocapsa triquetra chloroplast transcripts and a folding model for its divergent chloroplast 16S rRNA.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Development of a diagnostic PCR to detect Neoparamoeba perurans, agent of amoebic gill disease

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Strategies of kinetoplastid cryptogene discovery and analysis

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Conserved repeats in the kinetoplast maxicircle divergent region of Leishmania sp. and Leptomonas seymouri.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

TbMP57 is a 3' terminal uridylyl transferase (TUTase) of the Trypanosoma brucei editosome

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

A trypanosome mitochondrial RNA polymerase is required for transcription and replication

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

RNA editing as a source of genetic variation.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4669381

Neoparamoeba Page, 1987: light and electron microscopic observations on six strains of different origin

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26628723

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26628723

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Neoparamoeba spp. and their eukaryotic endosymbionts similar to Perkinsela amoebae (Hollande, 1980): coevolution demonstrated by SSU rRNA gene phylogenies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26628723

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/MBIO.01498-15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26628723%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26628723%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference