Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: a model for homology search in homologous genetic recombination (Q36306714)

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English	Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: a model for homology search in homologous genetic recombination	scientific article

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scholarly article

1 reference

Europe PubMed Central

13 August 2017

Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: a model for homology search in homologous genetic recombination (English)

1 reference

Europe PubMed Central

13 August 2017

author name string

Nishinaka T

1

1 reference

Europe PubMed Central

13 August 2017

Shinohara A

2

1 reference

Europe PubMed Central

13 August 2017

Ito Y

3

1 reference

Europe PubMed Central

13 August 2017

Yokoyama S

4

1 reference

Europe PubMed Central

13 August 2017

Shibata T

5

1 reference

Europe PubMed Central

13 August 2017

language of work or name

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publication date

1 September 1998

1 reference

Europe PubMed Central

13 August 2017

Proceedings of the National Academy of Sciences of the United States of America

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Europe PubMed Central

13 August 2017

95

1 reference

Europe PubMed Central

13 August 2017

19

1 reference

Europe PubMed Central

13 August 2017

11071-11076

1 reference

Europe PubMed Central

13 August 2017

ISOLATION AND CHARACTERIZATION OF RECOMBINATION-DEFICIENT MUTANTS OF ESCHERICHIA COLI K12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Genetical Implications of the Structure of Deoxyribonucleic Acid

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

An extended DNA structure through deoxyribose-base stacking induced by RecA protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

RecA protein: structure, function, and role in recombinational DNA repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Homologous recognition by RecA protein using non-equivalent three DNA-strand-binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

The inactive form of recA protein: the 'compact' structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Cloning of human, mouse and fission yeast recombination genes homologous to RAD51 and recA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Structure and function of RecA-DNA complexes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Why does RecA protein hydrolyse ATP?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Purification and characterization of the human Rad51 protein, an analogue of E. coli RecA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Biochemistry of homologous recombination in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

High-resolution structure of a DNA helix forming (C.G)*G base triplets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

RecA.oligonucleotide filaments bind in the minor groove of double-stranded DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

The helicity of DNA in complexes with recA protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

recA protein of Escherichia coli promotes branch migration, a kinetically distinct phase of DNA strand exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

recA protein promotes homologous-pairing and strand-exchange reactions between duplex DNA molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Sequences of the recA gene and protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Isolation and visualization of active presynaptic filaments of recA protein and single-stranded DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Initiation of genetic recombination: homologous pairing between duplex DNA molecules promoted by recA protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Recognition of duplex DNA containing single-stranded regions by recA protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Heteroduplex formation by recA protein: polarity of strand exchanges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Directionality and polarity in recA protein-promoted branch migration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Polarity of heteroduplex formation promoted by Escherichia coli recA protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Organization of the recA gene of Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Integration efficiency and genetic recombination in pneumococcal transformation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

The pairing activity of stable nucleoprotein filaments made from recA protein, single-stranded DNA, and adenosine 5'-(gamma-thio)triphosphate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

The accessibility of DNA to dimethylsulfate in complexes with recA protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Enzymes of general recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Conserved sequences and structures of group I introns: building an active site for RNA catalysis--a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Ionic inhibition of formation of RecA nucleoprotein networks blocks homologous pairing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Structure of helical RecA-DNA complexes. Complexes formed in the presence of ATP-gamma-S or ATP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Fibers of RecA protein and complexes of RecA protein and single-stranded phi X174 DNA as visualized by negative-stain electron microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Sequence of the T4 recombination gene, uvsX, and its comparison with that of the recA gene of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Visualization of RecA protein and its complexes with DNA by quick-freeze/deep-etch electron microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Helical RecA nucleoprotein filaments mediate homologous pairing and strand exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Stable DNA heteroduplex formation catalyzed by the Escherichia coli RecA protein in the absence of ATP hydrolysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Energetics of RecA-mediated recombination reactions. Without ATP hydrolysis RecA can mediate polar strand exchange but is unable to recycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

The ATPase activity of RecA is needed to push the DNA strand exchange through heterologous regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Rad51 protein involved in repair and recombination in S. cerevisiae is a RecA-like protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

RNA recombination in animal and plant viruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Structural data suggest that the active and inactive forms of the RecA filament are not simply interconvertible

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Torsional stress generated by RecA protein during DNA strand exchange separates strands of a heterologous insert

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Enzymes and molecular mechanisms of genetic recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Initiation of general recombination catalyzed in vitro by the recA protein of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Single strands induce recA protein to unwind duplex DNA for homologous pairing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Homologous pairing in genetic recombination: complexes of recA protein and DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Purified Escherichia coli recA protein catalyzes homologous pairing of superhelical DNA and single-stranded fragments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Locations of functional domains in the RecA protein. Overlap of domains and regulation of activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

30 September 2017

Evidence for the coupling of ATP hydrolysis to the final (extension) phase of RecA protein-mediated DNA strand exchange.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

DNA strand exchange promoted by RecA K72R. Two reaction phases with different Mg2+ requirements.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

DNA conformation induced by the bacteriophage T4 UvsX protein appears identical to the conformation induced by the Escherichia coli RecA protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

Kinetics of homologous pairing promoted by RecA protein: effects of ends and internal sites in DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

Visualization of the homologous pairing of DNA catalyzed by the bacteriophage T4 UvsX protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

The uvsX protein of bacteriophage T4 arranges single-stranded and double-stranded DNA into similar helical nucleoprotein filaments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

Pairing of homologous DNA sequences by proteins: evidence for three-stranded DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

Structure of a RecA-DNA complex from linear dichroism and small-angle neutron-scattering in flow-oriented solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

Triple-helical DNA pairing intermediates formed by recA protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

RecA protein reinitiates strand exchange on isolated protein-free DNA intermediates. An ADP-resistant process.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

Structure of RecA-DNA complexes studied by combination of linear dichroism and small-angle neutron scattering measurements on flow-oriented samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

Use of structure-directed DNA ligands to probe the binding of recA protein to narrow and wide grooves of DNA and on its ability to promote homologous pairing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

29 June 2018

A mechanism for gene conversion in fungi

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

A parallel DNA triplex as a model for the intermediate in homologous recombination.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Interactions of three strands in joints made by RecA protein.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

DNA strand exchange mediated by the Escherichia coli RecA protein initiates in the minor groove of double-stranded DNA.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

New parameters for the refinement of nucleic acid-containing structures.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Alteration of the nucleoside triphosphate (NTP) catalytic domain within Escherichia coli recA protein attenuates NTP hydrolysis but not joint molecule formation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21597

22 September 2018

Similarity of the yeast RAD51 filament to the bacterial RecA filament

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Role of RecA protein spiral filaments in genetic recombination

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

ATP-dependent unwinding of double helix in closed circular DNA by RecA protein of E. coli

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Elongation of duplex DNA by recA protein

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Electron microscopic visualization of recA-DNA filaments: evidence for a cyclic extension of duplex DNA

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Visualization of RecA-DNA complexes involved in consecutive stages of an in vitro strand exchange reaction

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Probing the structure of a putative intermediate in homologous recombination: the third strand in the parallel DNA triplex is in contact with the major groove of the duplex

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Sequence-specific covalent modification of DNA by cross-linking oligonucleotides. Catalysis by RecA and implication for the mechanism of synaptic joint formation

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Characterization of complexes between recA protein and duplex DNA by electron microscopy

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Conformations of three-stranded DNA structures formed in presence and in absence of the RecA protein

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

The mechanics of winding and unwinding helices in recombination: torsional stress associated with strand transfer promoted by RecA protein

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.19.11071

21 January 2018

Separation of the presynaptic and synaptic phases of homologous pairing promoted by recA protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/9736691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Putative three-stranded DNA pairing intermediate in recA protein-mediated DNA strand exchange: no role for guanine N-7

1 reference

https://pubmed.ncbi.nlm.nih.gov/9736691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the role of ATP hydrolysis in RecA protein-mediated DNA strand exchange. I. Bypassing a short heterologous insert in one DNA substrate

1 reference

https://pubmed.ncbi.nlm.nih.gov/9736691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.95.19.11071

1 reference

Europe PubMed Central

13 August 2017

1998PNAS...9511071N

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1 reference

Europe PubMed Central

13 August 2017

1 reference

Europe PubMed Central

13 August 2017

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