A fractal model for nuclear organization: current evidence and biological implications (Q36305576)

13 August 2017

3 references

19 September 2019

12 October 2019

20 December 2019

A fractal model for nuclear organization: current evidence and biological implications (English)

1 reference

biomedical investigative technique

13 August 2017

1 reference

19 September 2019

1 reference

12 October 2019

1 reference

20 December 2019

4

1 reference

13 August 2017

Aurélien Bancaud

1

1 reference

13 August 2017

Christophe Lavelle

series ordinal

2

1 reference

13 August 2017

Sébastien Huet

series ordinal

3

1 reference

13 August 2017

language of work or name

English

0 references

publication date

11 July 2012

1 reference

13 August 2017

1 October 2012

3 references

19 September 2019

12 October 2019

20 December 2019

Nucleic Acids Research

4 references

13 August 2017

19 September 2019

12 October 2019

20 December 2019

40

1 reference

13 August 2017

18

1 reference

13 August 2017

8783-8792

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

13 August 2017

3 references

19 September 2019

12 October 2019

Chromatin globules: a common motif of higher order chromosome structure?

20 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

The fractal globule as a model of chromatin architecture in the cell

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Diffusion-driven looping provides a consistent framework for chromatin organization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Chromatin higher-order structure and dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Fractal geometry in the nucleus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Chromosome crosstalk in three dimensions.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Spatially confined folding of chromatin in the interphase nucleus.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Fluorescence nanoscopy by ground-state depletion and single-molecule return

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Structure and dynamics of interphase chromosomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Macromolecular crowding and its potential impact on nuclear function

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Elucidating chromatin and nuclear domain architecture with electron spectroscopic imaging

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Probing microscopic origins of confined subdiffusion by first-passage observables

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Three-dimensional nanoscopy of colloidal crystals

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Probing intranuclear environments at the single-molecule level

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Facultative heterochromatin: is there a distinctive molecular signature?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Chromatin fiber structure: Where is the problem now?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Nanopipette delivery of individual molecules to cellular compartments for single-molecule fluorescence tracking

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Probing transcription factor dynamics at the single-molecule level in a living cell

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Microenvironment and effect of energy depletion in the nucleus analyzed by mobility of multiple oligomeric EGFPs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Imaging intracellular fluorescent proteins at nanometer resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Chromosome territories--a functional nuclear landscape.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

DNA labeling in living cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

3-D particle tracking in a two-photon microscope: application to the study of molecular dynamics in cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Trichostatin A-induced histone acetylation causes decondensation of interphase chromatin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Visualizing telomere dynamics in living mammalian cells using PNA probes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Toward fluorescence nanoscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

4D imaging to assay complex dynamics in live specimens

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Visualizing chromatin and chromosomes in living cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Ultrastructural complexity of nuclear components during early apoptotic phases in breast cancer cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Fractals in biology and medicine

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Asymmetries in the nucleosome core particle at 2.5 A resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Regulation of chromatin structure by site-specific histone H3 methyltransferases

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Anomalous diffusion of fluorescent probes inside living cell nuclei investigated by spatially-resolved fluorescence correlation spectroscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

The organization of replication and transcription

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Compartmentalization of interphase chromosomes observed in simulation and experiment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Crystal structure of the nucleosome core particle at 2.8 A resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Translational diffusion of macromolecule-sized solutes in cytoplasm and nucleus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Lateral diffusion in an archipelago. Dependence on tracer size

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Anomalous diffusion due to obstacles: a Monte Carlo study

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

A random-walk/giant-loop model for interphase chromosomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Evidence for the organization of chromatin in megabase pair-sized loops arranged along a random walk path in the human G0/G1 interphase nucleus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Optical studies of the interaction of 33258 Hoechst with DNA, chromatin, and metaphase chromosomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Geometry-induced bursting dynamics in gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Sampling the cell with anomalous diffusion - the discovery of slowness

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Localization microscopy reveals expression-dependent parameters of chromatin nanostructure

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

High resolution imaging of changes in the structure and spatial organization of chromatin, gamma-H2A.X and the MRN complex within etoposide-induced DNA repair foci

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Lab-on-Chip for fast 3D particle tracking in living cells.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

The physics behind the larger scale organization of DNA in eukaryotes.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Conformational properties of compact polymers.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Chromatin texture is size dependent in follicular adenomas but not in hyperplastic nodules of the thyroid

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Dissecting the contribution of diffusion and interactions to the mobility of nuclear proteins

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Development of 3D chromatin texture analysis using confocal laser scanning microscopy.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

The three 'C' s of chromosome conformation capture: controls, controls, controls.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Fractal properties of the human genome.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Heterochromatin and complexity: a theoretical approach.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Annexation of the interchromosomal space during viral infection.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Is fractal geometry useful in medicine and biomedical sciences?

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Fractal characterization of chromatin appearance for diagnosis in breast cytology.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Non-linear dynamics for clinicians: chaos theory, fractals, and complexity at the bedside.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Crumpled Globule Model of the Three-Dimensional Structure of DNA

22 September 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS586

The role of topological constraints in the kinetics of collapse of macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS586

APPLIED MATHEMATICS:Is the Geometry of Nature Fractal?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS586

Fractal-based description of natural scenes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467038

Facilitated Diffusion of Proteins on Chromatin

21 October 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS586

How to “Read” a Vitreous Section

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS586

Physical Constraints in the Condensation of Eukaryotic Chromosomes. Local Concentration of DNA versus Linear Packing Ratio in Higher Order Chromatin Structures†

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS586

First-passage times in complex scale-invariant media

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS586

The physics of rapid cooling and its implications for cryoimmobilization of cells

21 January 2018

1 reference

12 December 2020

The influence of staining characteristics on nuclear texture features in cytology

1 reference

12 December 2020

Live-cell super-resolution imaging with trimethoprim conjugates

1 reference

12 December 2020

Spectral dimension of branched structures: Universality in geometrical disorder

1 reference

12 December 2020

Concentration evaluation of chromatin in unstained resin-embedded sections by means of low-dose ratio-contrast imaging in STEM

1 reference

12 December 2020

Application of the Minkowski-Bouligand fractal dimension for the differential diagnosis of thyroid follicular neoplasias

1 reference

12 December 2020

Bifractality of human DNA strand-asymmetry profiles results from transcription

1 reference

12 December 2020

Long-range fractal correlations in DNA

1 reference

12 December 2020

Evolution of long-range fractal correlations and 1/f noise in DNA base sequences

1 reference

12 December 2020

Phenotypic subtypes of acute lymphoblastic leukemia associated with different nuclear chromatin texture

1 reference

12 December 2020

Structure of random porous materials: Silica aerogel

1 reference

12 December 2020

Geometry-controlled kinetics

1 reference

12 December 2020

Fractality of DNA texts

1 reference

12 December 2020

Fractal nature of chromatin organization in interphase chicken erythrocyte nuclei: DNA structure exhibits biphasic fractal properties

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKS586

1 reference

13 August 2017

1 reference

13 August 2017

1 reference