Crowdsourcing network inference: the DREAM predictive signaling network challenge (Q36300033)

13 August 2017

Crowdsourcing network inference: the DREAM predictive signaling network challenge (English)

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13 August 2017

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Peter K Sorger

4

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Julio Saez-Rodriguez

object named as

Julio Saez-Rodriguez

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Gustavo Stolovitzky

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5

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Gustavo Stolovitzky

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PMCID

3465072

13 August 2017

Leonidas G Alexopoulos

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3

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Leonidas G Alexopoulos

1 reference

13 August 2017

Robert J Prill

1

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13 August 2017

30 August 2011

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13 August 2017

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13 August 2017

4

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13 August 2017

mr7

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13 August 2017

189

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PMCID

3465072

describes a project that uses

13 August 2017

crowdsourcing

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cites work

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

1 reference

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A Boolean approach to linear prediction for signaling network modeling

30 September 2017

1 reference

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Networks inferred from biochemical data reveal profound differences in toll-like receptor and inflammatory signaling between normal and transformed hepatocytes

30 September 2017

1 reference

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Revealing strengths and weaknesses of methods for gene network inference

30 September 2017

1 reference

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Logic-based models for the analysis of cell signaling networks

30 September 2017

1 reference

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Systems analysis of EGF receptor signaling dynamics with microwestern arrays

30 September 2017

1 reference

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Identifying drug effects via pathway alterations using an integer linear programming optimization formulation on phosphoproteomic data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Dissecting protein function and signaling using protein microarrays.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Combining multiple results of a reverse-engineering algorithm: application to the DREAM five-gene network challenge

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Ordered cyclic motifs contribute to dynamic stability in biological and engineered networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Models from experiments: combinatorial drug perturbations of cancer cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Survival of the sparsest: robust gene networks are parsimonious

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Formation of regulatory patterns during signal propagation in a Mammalian cellular network

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Causal protein-signaling networks derived from multiparameter single-cell data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

How to infer gene networks from expression profiles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

Lessons from the DREAM2 Challenges

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465072

10.1126/SCISIGNAL.2002212

22 September 2018

Identifiers

DOI

1 reference

13 August 2017

1 reference

13 August 2017

1 reference

PMCID

3465072