The importance of surface loops for stabilizing an eightfold βα barrel protein (Q36277343)

https://api.crossref.org/works/10.1002/PRO.5560010105

protein tertiary structure

29 November 2023

main subject

beta barrel

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1304881

29 November 2023

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1304881

29 November 2023

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

29 November 2023

author name string

R. Urfer

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1304881

1

1 reference

29 November 2023

K. Kirschner

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1304881

2

1 reference

29 November 2023

language of work or name

English

1 reference

National Center for Biotechnology Information

PubMed ID

1304881

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=1304881

full work available at URL

29 November 2023

publication date

1 January 1992

1 reference

13 August 2017

https://europepmc.org/articles/pmc2142075?pdf=render

file format

Portable Document Format

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1304881

https://europepmc.org/articles/PMC2142075

29 November 2023

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1304881

https://europepmc.org/articles/PMC2142075?pdf=render

29 November 2023

file format

Portable Document Format

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1304881

https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2Fpro.5560010105

29 November 2023

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

https://onlinelibrary.wiley.com/doi/pdf/10.1002/pro.5560010105

29 November 2023

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

29 November 2023

1 reference

13 August 2017

1

1 reference

13 August 2017

31-45

1 reference

13 August 2017

1

1 reference

13 August 2017

Procedure for production of hybrid genes and proteins and its use in assessing significance of amino acid differences in homologous tryptophan synthetase alpha polypeptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Loops in globular proteins: a novel category of secondary structure

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Why do globular proteins fit the limited set of folding patterns?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Analysis, design and modification of loop regions in proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Reshaping human antibodies for therapy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Transfer of a beta-turn structure to a new protein context

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Refined structure of spinach glycolate oxidase at 2 A resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Structural principles of alpha/beta barrel proteins: the packing of the interior of the sheet

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Deletions and replacements of omega loops in yeast iso-1-cytochrome c

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Efficient oligonucleotide-directed construction of mutations in expression vectors by the gapped duplex DNA method using alternating selectable markers.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

A set of programs for analysis of kinetic and equilibrium data.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

The evolution of alpha/beta barrel enzymes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

The classification and origins of protein folding patterns

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Protein folding: local structures, domains, subunits, and assemblies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Energetic approach to the folding of α/β barrels

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

A helix-turn-strand structural motif common in α-β proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

N-(5-Phosphoribosyl)anthranilate isomerase-indoleglycerol-phosphate synthase. 1. A substrate analog binds to two different binding sites on the bifunctional enzyme from Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Subregions of a conserved part of the HIV gp41 transmembrane protein are differentially recognized by antibodies of infected individuals

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Crucial role of the connecting region joining the two functional domains of yeast tryptophan synthetase.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Structural determinants of the conformations of medium-sized loops in proteins.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

The role of internal packing interactions in determining the structure and stability of a protein

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Structural conservation in parallel beta/alpha-barrel enzymes that catalyze three sequential reactions in the pathway of tryptophan biosynthesis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Exposure of tryptophanyl residues in proteins. Quantitative determination by fluorescence quenching studies

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2142075

Fluorescence-quenching studies on a conformational transition within a domain of the beta2 subunit of Escherichia coli tryptophan synthase

29 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/1304881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A beta-galactosidase deletion mutant of Lactobacillus bulgaricus reverts to generate an active enzyme by internal DNA sequence duplication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/1304881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Purification and characterization of yeast anthranilate phosphoribosyltransferase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/1304881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A fully active variant of dihydrofolate reductase with a circularly permuted sequence.

4

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Circular and circularly permuted forms of bovine pancreatic trypsin inhibitor

29 November 2023

16

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Limited proteolysis of N-(5'-phosphoribosyl)anthranilate isomerase: indoleglycerol phosphate synthase from Escherichia coli yields two different enzymically active, functional domains

29 November 2023

20

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Structural principles of parallel beta-barrels in proteins

29 November 2023

22

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Correct folding of circularly permuted variants of a beta alpha barrel enzyme in vivo

29 November 2023

27

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

An 8-fold beta alpha barrel protein with redundant folding possibilities

29 November 2023

28

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Improving the prediction of secondary structure of ‘TIM-barrel’ enzymes

29 November 2023

30

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Three-dimensional structure of the bifunctional enzyme N-(5'-phosphoribosyl)anthranilate isomerase-indole-3-glycerol-phosphate synthase from Escherichia coli

29 November 2023

31

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

DNA sequencing with chain-terminating inhibitors

29 November 2023

35

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Recurrent alpha beta loop structures in TIM barrel motifs show a distinct pattern of conserved structural features.

29 November 2023

36

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Complementation in folding and fragment exchange

29 November 2023

39

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications

29 November 2023

41

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Three-dimensional structure of the bifunctional enzyme phosphoribosylanthranilate isomerase: Indoleglycerolphosphate synthase from Escherichia coli refined at 2.0 Å resolution

29 November 2023

44

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

Atomic structure of adenosine deaminase complexed with a transition-state analog: understanding catalysis and immunodeficiency mutations

29 November 2023

45

1 reference

https://api.crossref.org/works/10.1002/PRO.5560010105

29 November 2023

Identifiers