Differential network analysis reveals dysfunctional regulatory networks in gastric carcinogenesis (Q36250600)

13 August 2017

Differential network analysis reveals dysfunctional regulatory networks in gastric carcinogenesis (English)

1 reference

13 August 2017

1 reference

Mu-Shui Cao

1

1 reference

13 August 2017

Bing-Ya Liu

2

1 reference

13 August 2017

Wen-Tao Dai

3

1 reference

13 August 2017

Wei-Xin Zhou

4

1 reference

13 August 2017

Yi-Xue Li

5

1 reference

13 August 2017

Yuan-Yuan Li

6

1 reference

13 August 2017

15 August 2015

1 reference

American Journal of Cancer Research

13 August 2017

1 reference

13 August 2017

5

1 reference

13 August 2017

2605-2625

1 reference

13 August 2017

9

1 reference

describes a project that uses

13 August 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4633893

based on heuristic

inferred from PubMed Central ID database lookup

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The novel Aryl hydrocarbon receptor inhibitor biseugenol inhibits gastric tumor growth and peritoneal dissemination

1 October 2017

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TRIB1 supports prostate tumorigenesis and tumor-propagating cell survival by regulation of endoplasmic reticulum chaperone expression

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1 October 2017

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Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer

1 October 2017

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1 October 2017

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Decreased expression of the GATA3 gene is associated with poor prognosis in primary gastric adenocarcinoma

1 October 2017

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An integrative analysis reveals functional targets of GATA6 transcriptional regulation in gastric cancer.

1 October 2017

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Converting a microarray signature into a diagnostic test: a trial of custom 74 gene array for clarification and prediction the prognosis of gastric cancer

1 October 2017

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1 October 2017

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1 October 2017

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SOSTDC1 down-regulation of expression involves CpG methylation and is a potential prognostic marker in gastric cancer

1 October 2017

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ToP: a trend-of-disease-progression procedure works well for identifying cancer genes from multi-state cohort gene expression data for human colorectal cancer

1 October 2017

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Retracted: miR-23a Targets Interferon Regulatory Factor 1 and Modulates Cellular Proliferation and Paclitaxel-Induced Apoptosis in Gastric Adenocarcinoma Cells

1 October 2017

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Differential network analysis for the identification of condition-specific pathway activity and regulation

1 October 2017

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Differential network analysis in human cancer research

1 October 2017

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Dynamic regulatory network controlling TH17 cell differentiation

1 October 2017

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Differential combinatorial regulatory network analysis related to venous metastasis of hepatocellular carcinoma

1 October 2017

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Copy number variation in ACHE/EPHB4 (7q22) and in BCHE/MME (3q26) genes in sporadic breast cancer

1 October 2017

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PINCH expression and its clinicopathological significance in gastric adenocarcinoma

1 October 2017

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Combinatorial network of transcriptional regulation and microRNA regulation in human cancer

1 October 2017

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Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets

1 October 2017

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Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis

1 October 2017

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Integration of DNA copy number alterations and transcriptional expression analysis in human gastric cancer.

1 October 2017

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Losses of chromosome 5q and 14q are associated with favorable clinical outcome of patients with gastric cancer

1 October 2017

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Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers

1 October 2017

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Differential network biology

1 October 2017

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FOXC1 regulates the functions of human basal-like breast cancer cells by activating NF-κB signaling

1 October 2017

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Downregulation of Id1 by small interfering RNA in gastric cancer inhibits cell growth via the Akt pathway

1 October 2017

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Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer

1 October 2017

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APOE and FABP2 Polymorphisms and History of Myocardial Infarction, Stroke, Diabetes, and Gallbladder Disease.

1 October 2017

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Link-based quantitative methods to identify differentially coexpressed genes and gene pairs.

1 October 2017

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Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine

1 October 2017

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Nuclear receptor SHP inhibition of Dnmt1 expression via ERRγ.

1 October 2017

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Genome-wide analysis of microRNA and mRNA expression signatures in hydroxycamptothecin-resistant gastric cancer cells

1 October 2017

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Fibromodulin suppresses nuclear factor-kappaB activity by inducing the delayed degradation of IKBA via a JNK-dependent pathway coupled to fibroblast apoptosis

1 October 2017

1 reference

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Clinicopathological significance of platelet-derived growth factor (PDGF)-B and vascular endothelial growth factor-A expression, PDGF receptor-β phosphorylation, and microvessel density in gastric cancer

1 October 2017

1 reference

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1 October 2017

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DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data

1 October 2017

1 reference

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From 'differential expression' to 'differential networking' - identification of dysfunctional regulatory networks in diseases

1 October 2017

1 reference

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A statistical framework for differential network analysis from microarray data

1 October 2017

1 reference

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Cancer systems biology: a network modeling perspective

1 October 2017

1 reference

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Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms

1 October 2017

1 reference

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Reverse engineering and verification of gene networks: principles, assumptions, and limitations of present methods and future perspectives.

1 October 2017

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Association of LETM1 and MRPL36 contributes to the regulation of mitochondrial ATP production and necrotic cell death.

1 October 2017

1 reference

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Differential dependency network analysis to identify condition-specific topological changes in biological networks

1 October 2017

1 reference

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Involvement of estrogen-related receptors in transcriptional response to hypoxia and growth of solid tumors

1 October 2017

1 reference

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PINCH-1 regulates the ERK-Bim pathway and contributes to apoptosis resistance in cancer cells

1 October 2017

1 reference

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DrugBank: a knowledgebase for drugs, drug actions and drug targets

1 October 2017

1 reference

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213Bi-induced death of HSC45-M2 gastric cancer cells is characterized by G2 arrest and up-regulation of genes known to prevent apoptosis but induce necrosis and mitotic catastrophe

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Global and local architecture of the mammalian microRNA-transcription factor regulatory network.

1 October 2017

1 reference

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Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae

1 October 2017

1 reference

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The epigenetic silencing of LIMS2 in gastric cancer and its inhibitory effect on cell migration

1 October 2017

1 reference

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ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

1 October 2017

1 reference

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 October 2017

1 reference

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CDX2-regulated expression of iron transport protein hephaestin in intestinal and colonic epithelium

1 October 2017

1 reference

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Effects of transforming growth interacting factor on biological behaviors of gastric carcinoma cells

1 October 2017

1 reference

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Genomic analysis of regulatory network dynamics reveals large topological changes

1 October 2017

1 reference

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Cancer genes and the pathways they control

1 October 2017

1 reference

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Regulators of G-protein signaling 3 and 4 (RGS3, RGS4) are associated with glioma cell motility.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

A census of human cancer genes

1 October 2017

1 reference

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DAVID: Database for Annotation, Visualization, and Integrated Discovery

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Functionally inactivating point mutation in the tumor-suppressor IRF-1 gene identified in human gastric cancer

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Human gastric carcinogenesis: a multistep and multifactorial process--First American Cancer Society Award Lecture on Cancer Epidemiology and Prevention

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Analysis of long non-coding RNA expression profiles in gastric cancer

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis.

29 June 2018

1 reference

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Comparative metabolomics of estrogen receptor positive and estrogen receptor negative breast cancer: alterations in glutamine and beta-alanine metabolism

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Alteration in the Wnt/β-catenin signaling pathway in gastric neoplasias of fundic gland (chief cell predominant) type

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Genetic variations in the PRKAA1 and ZBTB20 genes and gastric cancer susceptibility in a Korean population.

22 September 2018

1 reference

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Aberrant expression of SOX9 is associated with gastrokine 1 inactivation in gastric cancers

22 September 2018

1 reference

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Expression of CCAAT/enhancer binding protein beta in human gastric carcinoma and its clinical significance

22 September 2018

1 reference

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An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles

22 September 2018

1 reference

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A genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Gene expression changes in patient-matched gastric normal mucosa, adenomas, and carcinomas

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

A tutorial on analysis and simulation of boolean gene regulatory network models

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

Bayesian learning of sparse gene regulatory networks.

22 September 2018

1 reference

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C/EBPα expression is associated with homeostasis of the gastric epithelium and with gastric carcinogenesis

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633893

EGRI and FOSB gene expressions in cancer stroma are independent prognostic indicators for epithelial ovarian cancer receiving standard therapy

5 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26609471

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Detection of STAT2 in early stage of cervical premalignancy and in cervical cancer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26609471

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

1 reference

13 August 2017

1 reference