Comparative multi-omics systems analysis of Escherichia coli strains B and K-12 (Q36245229)

13 August 2017

Comparative multi-omics systems analysis of Escherichia coli strains B and K-12 (English)

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13 August 2017

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Sang Yup Lee

8

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author name string

Sung Ho Yoon

1

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13 August 2017

Mee-Jung Han

2

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13 August 2017

Haeyoung Jeong

3

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13 August 2017

Choong Hoon Lee

4

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13 August 2017

Xiao-Xia Xia

5

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13 August 2017

Dae-Hee Lee

6

1 reference

13 August 2017

Ji Hoon Shim

7

1 reference

13 August 2017

Tae Kwang Oh

9

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13 August 2017

Jihyun F Kim

10

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13 August 2017

25 May 2012

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13 August 2017

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13 August 2017

13

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13 August 2017

5

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13 August 2017

R37

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describes a project that uses

13 August 2017

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/gb-2012-13-5-r37

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cites work

Genome evolution and adaptation in a long-term experiment with Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

The anatomy of microbial cell state transitions in response to oxygen

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Overcoming acetate in Escherichia coli recombinant protein fermentations

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

The model organism as a system: integrating 'omics' data sets

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

The Rcs phosphorelay: a complex signal transduction system

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

A computational approach for identifying pathogenicity islands in prokaryotic genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Prokaryotic toxin-antitoxin stress response loci

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Sensing external stress: watchdogs of the Escherichia coli cell envelope

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Genome-scale models of microbial cells: evaluating the consequences of constraints

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Integrating high-throughput and computational data elucidates bacterial networks

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Molecular basis of bacterial outer membrane permeability revisited

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

New technologies to assess genotype-phenotype relationships

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

IS186 insertion at a hot spot in the lon promoter as a basis for lon protease deficiency of Escherichia coli B: identification of a consensus target sequence for IS186 transposition

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Expression of the endogenous type II secretion pathway in Escherichia coli leads to chitinase secretion.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Proteome analysis of metabolically engineered Escherichia coli producing Poly(3-hydroxybutyrate).

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

The complete genome sequence of Escherichia coli K-12

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Coordinated regulation of amino sugar-synthesizing and -degrading enzymes in Escherichia coli K-12.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Assessment of Escherichia coli B with enhanced permeability to fluorochromes for flow cytometric assays of bacterial cell function

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Growth of Escherichia coli in acetate as a sole carbon source is inhibited by ankyrin-like repeats present in the 2',5'-linked oligoadenylate-dependent human RNase L enzyme.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).

29 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-5-R37

Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-5-R37

A predictive model for transcriptional control of physiology in a free living cell.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-5-R37

Glucose metabolism at high density growth of E. coli B and E. coli K: differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and Northern blot analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-5-R37

Molecular basis of bacterial outer membrane permeability

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-5-R37

The proteome of Mannheimia succiniciproducens, a capnophilic rumen bacterium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2012-13-5-R37

Structural studies on the hexose region of the core in lipopolysaccharides from Enterobacteriaceae.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446290

Combined transcriptome and proteome analysis ofEscherichia coli during high cell density culture

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22632713

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparison of cellular stress levels and green-fluorescent-protein expression in several Escherichia coli strains

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22632713

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2012-13-5-R37

1 reference

Dimensions Publication ID

13 August 2017

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1 reference

13 August 2017

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