Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution (Q36187453)

12 August 2017

Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution (English)

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12 August 2017

19

Xiang Jia Min

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12 August 2017

21

Deborah Charlesworth

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12 August 2017

24

Andrew H Paterson

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12 August 2017

Jianping Wang

1

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12 August 2017

Jong-Kuk Na

2

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12 August 2017

Qingyi Yu

3

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12 August 2017

Andrea R Gschwend

4

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12 August 2017

Jennifer Han

5

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12 August 2017

Fanchang Zeng

6

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12 August 2017

Rishi Aryal

7

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12 August 2017

Robert VanBuren

8

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12 August 2017

Jan E Murray

9

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12 August 2017

Wenli Zhang

10

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12 August 2017

Rafael Navajas-Pérez

11

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12 August 2017

F Alex Feltus

12

1 reference

12 August 2017

Cornelia Lemke

13

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12 August 2017

Eric J Tong

14

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12 August 2017

Cuixia Chen

15

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12 August 2017

Ching Man Wai

16

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12 August 2017

Ratnesh Singh

17

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12 August 2017

Ming-Li Wang

18

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12 August 2017

Maqsudul Alam

20

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12 August 2017

Paul H Moore

22

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12 August 2017

Jiming Jiang

23

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12 August 2017

Ray Ming

25

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12 August 2017

language of work or name

English

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publication date

6 August 2012

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Proceedings of the National Academy of Sciences of the United States of America

12 August 2017

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12 August 2017

109

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12 August 2017

34

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12 August 2017

13710-13715

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Rapid divergence and expansion of the X chromosome in papaya

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Construction of physical maps for the sex-specific regions of papaya sex chromosomes.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Sex chromosomes in land plants

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Patterns of neutral genetic variation on recombining sex chromosomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The role of repetitive DNA in structure and evolution of sex chromosomes in plants.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Low conservation of gene content in the Drosophila Y chromosome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The temporal dynamics of processes underlying Y chromosome degeneration

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Genomic degradation of a young Y chromosome in Drosophila miranda

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Genome structure and emerging evidence of an incipient sex chromosome in Populus

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Active miniature transposons from a plant genome and its nonrecombining Y chromosome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Gene organization of the liverwort Y chromosome reveals distinct sex chromosome evolution in a haploid system

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Initial sequence of the chimpanzee genome and comparison with the human genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Steps in the evolution of heteromorphic sex chromosomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The DNA sequence of the human X chromosome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Mauve: multiple alignment of conserved genomic sequence with rearrangements

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Evolutionary strata on the chicken Z chromosome: implications for sex chromosome evolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

1 October 2017

Male-driven evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Sex from W to Z: evolution of vertebrate sex chromosomes and sex determining genes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The degeneration of Y chromosomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Four evolutionary strata on the human X chromosome.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

CAP3: A DNA sequence assembly program

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The candidate spermatogenesis gene RBMY has a homologue on the human X chromosome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Tandem repeats finder: a program to analyze DNA sequences

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Consed: a graphical tool for sequence finishing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The population genetics of Drosophila transposable elements

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Preservation of the Y transcriptome in a 10-million-year-old plant sex chromosome system

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Evolution of the pseudoautosomal boundary in Old World monkeys and great apes

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Plant Y chromosome degeneration is retarded by haploid purifying selection.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Nucleotide diversity in Silene latifolia autosomal and sex-linked genes.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Genetic mapping of sex determination in a wild strawberry, Fragaria virginiana, reveals earliest form of sex chromosome.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The origin and evolution of human ampliconic gene families and ampliconic structure.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

A primitive Y chromosome in papaya marks incipient sex chromosome evolution.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Substitution rates in the X- and Y-linked genes of the plants, Silene latifolia and S. dioica.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

Reduced adaptation of a non-recombining neo-Y chromosome.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427123

The rate of spontaneous mutation of a human gene

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1207833109

The evolution of sex chromosomes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1207833109

Low X/Y divergence in four pairs of papaya sex-linked genes

21 January 2018

1 reference

12 December 2020

THE ACCUMULATION OF SEXUALLY ANTAGONISTIC GENES AS A SELECTIVE AGENT PROMOTING THE EVOLUTION OF REDUCED RECOMBINATION BETWEEN PRIMITIVE SEX CHROMOSOMES

1 reference

12 December 2020

Sex differences in fitness and selection for centric fusions between sex-chromosomes and autosomes

1 reference

12 December 2020

The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1207833109

1 reference

12 August 2017

0 references

1 reference

12 August 2017

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