A theory of protein dynamics to predict NMR relaxation (Q36175896)

12 August 2017

A theory of protein dynamics to predict NMR relaxation (English)

1 reference

12 August 2017

Esther Caballero-Manrique

1

1 reference

12 August 2017

Jenelle K Bray

2

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12 August 2017

William A Deutschman

3

1 reference

12 August 2017

Frederick W Dahlquist

4

1 reference

12 August 2017

Marina G Guenza

5

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12 August 2017

language of work or name

English

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publication date

31 August 2007

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12 August 2017

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12 August 2017

93

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12 August 2017

12

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12 August 2017

4128-4140

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Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

GROMACS: fast, flexible, and free

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Discriminating the helical forms of peptides by NMR and molecular dynamics simulation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Modeling the backbone dynamics of reduced and oxidized solvated rat microsomal cytochrome b5.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Diversity in chemotaxis mechanisms among the bacteria and archaea.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

High-resolution field-cycling NMR studies of a DNA octamer as a probe of phosphodiester dynamics and comparison with computer simulation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Dynamic activation of protein function: a view emerging from NMR spectroscopy.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Analysis of slow interdomain motion of macromolecules using NMR relaxation data

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

A distinct meta-active conformation in the 1.1-A resolution structure of wild-type ApoCheY

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Nmr probes of molecular dynamics: overview and comparison with other techniques

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Reduced surface: an efficient way to compute molecular surfaces

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Tyrosine 106 of CheY plays an important role in chemotaxis signal transduction in Escherichia coli

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Interior and surface of monomeric proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Crystal structure of Escherichia coli CheY refined at 1.7-A resolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

A 500 ps molecular dynamics simulation study of interleukin-1 beta in water. Correlation with nuclear magnetic resonance spectroscopy and crystallography.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

The role of solvent viscosity in the dynamics of protein conformational changes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

HYDRONMR: prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Contributions to protein entropy and heat capacity from bond vector motions measured by NMR spin relaxation.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Reconciling the "old" and "new" views of protein allostery: a molecular simulation study of chemotaxis Y protein (CheY).

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Cooperative dynamics in unentangled polymer fluids.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Protein dynamic studies move to a new time slot

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2098714

Temperature dependence of domain motions of calmodulin probed by NMR relaxation at multiple fields

5 December 2018

1 reference

12 December 2020

Temperature dependence of NMR order parameters and protein dynamics

1 reference

12 December 2020

Allostery without conformational change. A plausible model

1 reference

12 December 2020

Reorientational Eigenmode Dynamics: A Combined MD/NMR Relaxation Analysis Method for Flexible Parts in Globular Proteins

1 reference

12 December 2020

General Framework for Studying the Dynamics of Folded and Nonfolded Proteins by NMR Relaxation Spectroscopy and MD Simulation

1 reference

12 December 2020

Frictional models for stochastic simulations of proteins

1 reference

12 December 2020

Beyond the Decoupling Approximation in the Model Free Approach for the Interpretation of NMR Relaxation of Macromolecules in Solution

1 reference

12 December 2020

10.1529/BIOPHYSJ.107.111849

Identifiers

DOI

1 reference

12 August 2017

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12 August 2017

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