Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine (Q36168647)

12 August 2017

Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine (English)

1 reference

12 August 2017

Mridusmita Saikia

3

0 references

author name string

Qing Dai

1

1 reference

12 August 2017

Robert Fong

2

1 reference

12 August 2017

David Stephenson

4

1 reference

12 August 2017

Yi-tao Yu

5

1 reference

12 August 2017

Tao Pan

6

1 reference

12 August 2017

Joseph A Piccirilli

7

1 reference

12 August 2017

language of work or name

English

0 references

publication date

18 September 2007

1 reference

12 August 2017

Nucleic Acids Research

1 reference

12 August 2017

35

1 reference

12 August 2017

6322-6329

1 reference

12 August 2017

18

1 reference

tRNA's wobble decoding of the genome: 40 years of modification

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

SnoRNP biogenesis meets Pre-mRNA splicing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

A systematic, ligation-based approach to study RNA modifications

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

The building blocks and motifs of RNA architecture

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

The Small Subunit rRNA Modification Database

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Detection and quantitation of RNA base modifications

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Roles of Watson-Crick and minor groove hydrogen bonds in DNA replication

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

The expanding snoRNA world

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

RNA-guided nucleotide modification of ribosomal and other RNAs

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

The RNA Modification Database: 1999 update

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Characterization of oligonucleotides and nucleic acids by mass spectrometry

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Accumulation of spliced avian retrovirus mRNA is inhibited in S-adenosylmethionine-depleted chicken embryo fibroblasts

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Precise localization of m6A in Rous sarcoma virus RNA reveals clustering of methylation sites: implications for RNA processing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

N6-methyladenosine residues in an intron-specific region of prolactin pre-mRNA.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Methylations of adenosine residues (m6A) in pre-mRNA are important for formation of late simian virus 40 mRNAs

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

N6-Arylation of 2'-deoxyadenosine via copper-catalyzed direct coupling with aryl halides

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2094055

Studies on transfer RNAs. II. Modification of Escherichia coli formylmethionine transfer RNA

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17881375

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17881375

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM657

1 reference

release_23hoh4cw7fgmhjdkou7jdmdw3e

12 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/23hoh4cw7fgmhjdkou7jdmdw3e

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

12 August 2017

1 reference