Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription. (Q36163466)

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English	Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription.	scientific article

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scholarly article

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Europe PubMed Central

12 August 2017

Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription. (English)

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Europe PubMed Central

12 August 2017

author name string

Yuan-Chin Tsai

1

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Europe PubMed Central

12 August 2017

Todd M Greco

2

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Europe PubMed Central

12 August 2017

Apaporn Boonmee

3

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Europe PubMed Central

12 August 2017

Yana Miteva

4

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Europe PubMed Central

12 August 2017

Ileana M Cristea

5

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Europe PubMed Central

12 August 2017

publication date

1 May 2012

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Europe PubMed Central

12 August 2017

Molecular & Cellular Proteomics

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Europe PubMed Central

12 August 2017

11

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Europe PubMed Central

12 August 2017

60-76

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Europe PubMed Central

12 August 2017

5

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Europe PubMed Central

12 August 2017

describes a project that uses

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Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches

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2 October 2017

Structure and biochemical functions of SIRT6.

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2 October 2017

Cytoscape 2.8: new features for data integration and network visualization

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2 October 2017

Nuclear import of histone deacetylase 5 by requisite nuclear localization signal phosphorylation

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2 October 2017

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

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2 October 2017

Distinct factors control histone variant H3.3 localization at specific genomic regions

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2 October 2017

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

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2 October 2017

Shotgun proteomics data from multiple organisms reveals remarkable quantitative conservation of the eukaryotic core proteome

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2 October 2017

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

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Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development

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Sirt7-dependent inhibition of cell growth and proliferation might be instrumental to mediate tissue integrity during aging.

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2 October 2017

Involvement of SIRT7 in resumption of rDNA transcription at the exit from mitosis

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PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

1 reference

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Sirt7 increases stress resistance of cardiomyocytes and prevents apoptosis and inflammatory cardiomyopathy in mice

1 reference

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The biochemistry of sirtuins.

1 reference

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2 October 2017

Mammalian Sir2 homolog SIRT7 is an activator of RNA polymerase I transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418843

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The WSTF-SNF2h chromatin remodeling complex interacts with several nuclear proteins in transcription

1 reference

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The chromatin remodelling complex WSTF-SNF2h interacts with nuclear myosin 1 and has a role in RNA polymerase I transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418843

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Genomic instability and aging-like phenotype in the absence of mammalian SIRT6

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Fluorescent proteins as proteomic probes.

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Evolutionarily conserved and nonconserved cellular localizations and functions of human SIRT proteins

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c-Myc binds to human ribosomal DNA and stimulates transcription of rRNA genes by RNA polymerase I

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2 October 2017

c-Myc associates with ribosomal DNA and activates RNA polymerase I transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418843

2 October 2017

Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418843

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The chromatin remodeling complex NoRC and TTF-I cooperate in the regulation of the mammalian rRNA genes in vivo

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418843

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The Sir2 family of protein deacetylases

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Histone deacetylases (HDACs): characterization of the classical HDAC family

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418843

2 October 2017

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

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The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription

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The chromatin remodeling complex NoRC targets HDAC1 to the ribosomal gene promoter and represses RNA polymerase I transcription

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Structure of histone deacetylases: insights into substrate recognition and catalysis

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Reconstitution of recombinant chromatin establishes a requirement for histone-tail modifications during chromatin assembly and transcription

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Crystal structure of a SIR2 homolog-NAD complex

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418843

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Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins

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Mutations in ATRX, encoding a SWI/SNF-like protein, cause diverse changes in the pattern of DNA methylation

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Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors

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A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors

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Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast

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SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast

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2 October 2017

ATRX encodes a novel member of the SNF2 family of proteins: mutations point to a common mechanism underlying the ATR-X syndrome

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2 October 2017

A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p

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2 October 2017

Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1.

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2 October 2017

Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast

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Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA

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2 October 2017

Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription

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2 October 2017

X-ray scattering indicates that the leucine zipper is a coiled coil

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Proteasomal ATPases are associated with rDNA: the ubiquitin proteasome system plays a direct role in RNA polymerase I transcription

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Regulation of rRNA synthesis in human and mouse cells is not determined by changes in active gene count

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2 July 2018

Growth factor signaling regulates elongation of RNA polymerase I transcription in mammals via UBF phosphorylation and r-chromatin remodeling

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2 July 2018

Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle

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2 July 2018

Mutations in the chromatin-associated protein ATRX.

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23 September 2018

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing

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23 September 2018

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

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Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

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21 January 2018

Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines

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A position-effect control for gene transposition: State of expression of yeast mating-type genes affects their ability to switch

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12 December 2020

based on heuristic

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Affinity purification of protein complexes

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https://pubmed.ncbi.nlm.nih.gov/22586326

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conjugation of magnetic beads for immunopurification of protein complexes

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https://pubmed.ncbi.nlm.nih.gov/22586326

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/MCP.A111.015156

1 reference

Europe PubMed Central

12 August 2017

1 reference

Europe PubMed Central

12 August 2017

1 reference

Europe PubMed Central

12 August 2017

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