Predicting flexible length linear B-cell epitopes. (Q36105058)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19642274%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

title

Predicting flexible length linear B-cell epitopes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19642274%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19642274%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Vasant Honavar

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19642274%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

1

Yasser El-Manzalawy

1 reference

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3 February 2020

publication date

1 January 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19642274%20AND%20SRC:MED&resulttype=core&format=json

Computational systems bioinformatics. Computational Systems Bioinformatics Conference

3 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19642274%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19642274%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

page(s)

121-132

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19642274%20AND%20SRC:MED&resulttype=core&format=json

Predicting linear B-cell epitopes using string kernels

3 February 2020

cites work

1 reference

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Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

2 October 2017

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Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores

2 October 2017

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Improved method for predicting linear B-cell epitopes

2 October 2017

1 reference

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Machine learning approaches for prediction of linear B-cell epitopes on proteins

2 October 2017

1 reference

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Bcipep: a database of B-cell epitopes

2 October 2017

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Protein structure and fold prediction using tree-augmented naive Bayesian classifier.

2 October 2017

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SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence

2 October 2017

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The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

2 October 2017

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Prediction of secondary structural content of proteins from their amino acid composition alone. II. The paradox with secondary structural class

2 October 2017

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Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide

2 October 2017

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New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites

2 October 2017

1 reference

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Production and use of antibodies against synthetic peptides

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

8 Predicting location of continuous epitopes in proteins from their primary structures

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Continuous and discontinuous protein antigenic determinants.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Immunoinformatics. Predicting immunogenicity in silico. Preface

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Prediction of linear B-cell epitopes using amino acid pair antigenicity scale.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

MHC-BPS: MHC-binder prediction server for identifying peptides of flexible lengths from sequence-derived physicochemical properties.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Application of string kernels in protein sequence classification.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Benchmarking B cell epitope prediction: underperformance of existing methods

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Mismatch string kernels for discriminative protein classification

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Protein homology detection using string alignment kernels.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Distinguishing enzyme structures from non-enzymes without alignments

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Prediction of protein structural class by amino acid and polypeptide composition.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

The spectrum kernel: a string kernel for SVM protein classification.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Support vector machine approach for protein subcellular localization prediction

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Predictive estimation of protein linear epitopes by using the program PEOPLE.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

PREDITOP: a program for antigenicity prediction.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400678

Correlation between the location of antigenic sites and the prediction of turns in proteins

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19642274

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Characterisation of a protective linear B cell epitope against feline parvoviruses

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19642274

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

BEPITOPE: predicting the location of continuous epitopes and patterns in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19642274

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19642274%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

1 reference