The design of coiled-coil structures and assemblies (Q36101270)

12 August 2017

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title

The design of coiled-coil structures and assemblies (English)

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12 August 2017

Derek N Woolfson

1

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PubMed ID

15837514

12 August 2017

language of work or name

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1 January 2005

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Advances in Protein Chemistry

12 August 2017

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12 August 2017

70

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12 August 2017

79-112

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Buried polar residues in coiled-coil interfaces

12 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Protein design: the choice of de novo sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A coiled coil with a fluorous core

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Structure of influenza haemagglutinin at the pH of membrane fusion

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Improving coiled-coil stability by optimizing ionic interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

The coiled-coil trigger site of the rod domain of cortexillin I unveils a distinct network of interhelical and intrahelical salt bridges

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Design of a minimal protein oligomerization domain by a structural approach

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Coiled coils: a highly versatile protein folding motif

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Complementation of buried lysine and surface polar residues in a designed heterodimeric coiled coil.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Contribution of buried lysine residues to the oligomerization specificity and stability of the fos coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Influenza hemagglutinin is spring-loaded by a metastable native conformation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A spring-loaded mechanism for the conformational change of influenza hemagglutinin

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Use of a heterodimeric coiled-coil system for biosensor application and affinity purification

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Helix to helix packing in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A designed system for assessing how sequence affects alpha to beta conformational transitions in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Alpha-helical coiled coils and bundles: how to design an alpha-helical protein

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Alpha-helical coiled coils: more facts and better predictions

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Structural features in the heptad substructure and longer range repeats of two-stranded alpha-fibrous proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Three-stranded alpha-fibrous proteins: the heptad repeat and its implications for structure

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Computational design of a biologically active enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Crystal structure of GCN4-pIQI, a trimeric coiled coil with buried polar residues

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Design of heterotetrameric coiled coils: evidence for increased stabilization by Glu(-)-Lys(+) ion pair interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Refined crystal structure of the seryl-tRNA synthetase from Thermus thermophilus at 2.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Crystal structures of a single coiled-coil peptide in two oligomeric states reveal the basis for structural polymorphism

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

An engineered allosteric switch in leucine-zipper oligomerization

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Buried polar residues and structural specificity in the GCN4 leucine zipper

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Historical review: another 50th anniversary--new periodicities in coiled coils

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Design and characterization of a homodimeric antiparallel coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Crystal structure of an isoleucine-zipper trimer

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

High-resolution protein design with backbone freedom

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Automated design of specificity in molecular recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Rational protein design: combining theory and experiment

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Investigating the tolerance of coiled-coil peptides to nonheptad sequence inserts

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

De novo design of helical bundles as models for understanding protein folding and function.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Sequence requirements for coiled-coils: analysis with lambda repressor-GCN4 leucine zipper fusions

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Modeling of a five-stranded coiled coil structure for the assembly domain of the cartilage oligomeric matrix protein

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Organization of designed nanofibrils assembled from alpha-helical peptides as determined by electron microscopy.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Exploring amyloid formation by a de novo design

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

An autonomous folding unit mediates the assembly of two-stranded coiled coils

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Side-chain repacking calculations for predicting structures and stabilities of heterodimeric coiled coils

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Importance of secondary structural specificity determinants in protein folding: insertion of a native beta-sheet sequence into an alpha-helical coiled-coil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Interhelical Salt Bridges, Coiled-Coil Stability, and Specificity of Dimerization

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Are trigger sequences essential in the folding of two-stranded alpha-helical coiled-coils?

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Designing heterodimeric two-stranded alpha-helical coiled-coils: the effect of chain length on protein folding, stability and specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Designing heterodimeric two-stranded alpha-helical coiled-coils. Effects of hydrophobicity and alpha-helical propensity on protein folding, stability, and specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Atomic structure of a tryptophan-zipper pentamer

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

The number of protein folds and their distribution over families in nature.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Computational design of receptor and sensor proteins with novel functions

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Crystal structure of a synthetic triple-stranded alpha-helical bundle

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Subdomain folding of the coiled coil leucine zipper from the bZIP transcriptional activator GCN4

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Response: how much solar radiation do clouds absorb?

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Predicting coiled coils from protein sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Engineered and designed peptide-based fibrous biomaterials

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Importance of potential interhelical salt-bridges involving interior residues for coiled-coil stability and quaternary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Design and characterization of a heterodimeric coiled coil that forms exclusively with an antiparallel relative helix orientation.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Tropomyosin coiled-coil interactions: Evidence for an unstaggered structure

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Sequence repeats in α-tropomyosin

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Removing an interhelical salt bridge abolishes coiled-coil formation in a de novo designed peptide

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Shift of fibril-forming ability of the designed alpha-helical coiled-coil peptides into the physiological pH region

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Exploring protein interactions by interaction-induced folding of proteins from complementary peptide fragments

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Helical peptide and protein design

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

The retro-GCN4 leucine zipper sequence forms a stable three-dimensional structure

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Leucine is the most stabilizing aliphatic amino acid in the d position of a dimeric leucine zipper coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Designed heterodimerizing leucine zippers with a ranger of pIs and stabilities up to 10(-15) M

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Electrostatic interactions control the parallel and antiparallel orientation of alpha-helical chains in two-stranded alpha-helical coiled-coils

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

The relative positions of alanine residues in the hydrophobic core control the formation of two-stranded or four-stranded α-helical coiled-coils

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Formation of parallel and antiparallel coiled-coils controlled by the relative positions of alanine residues in the hydrophobic core

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Design and characterization of an intramolecular antiparallel coiled coil peptide

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Crystal structure of a designed, thermostable, heterotrimeric coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A designed heterotrimeric coiled coil.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Peptide 'Velcro': design of a heterodimeric coiled coil.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Mechanism of specificity in the Fos-Jun oncoprotein heterodimer

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Preferential heterodimer formation by isolated leucine zippers from fos and jun

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

The design of antiparallel coiled coils

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A buried polar interaction can direct the relative orientation of helices in a coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Springs and hinges: dynamic coiled coils and discontinuities.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Sequence and structural duality: designing peptides to adopt two stable conformations.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Sticky-end assembly of a designed peptide fiber provides insight into protein fibrillogenesis.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Coiled-coils in alpha-helix-containing proteins: analysis of the residue types within the heptad repeat and the use of these data in the prediction of coiled-coils in other proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Reversible hydrogels from self-assembling artificial proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

De novo design of fibrils made of short alpha-helical coiled coil peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Regulation of heat shock factor trimer formation: role of a conserved leucine zipper

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

"Belt and braces": a peptide-based linker system of de novo design.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Engineering the morphology of a self-assembling protein fibre

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Introducing branches into a self-assembling peptide fiber

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Fiber recruiting peptides: noncovalent decoration of an engineered protein scaffold

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Coiled-coil formation governed by unnatural hydrophobic core side chains

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Peptide tic-tac-toe: heterotrimeric coiled-coil specificity from steric matching of multiple hydrophobic side chains

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

pH-triggered strand exchange in coiled-coil heterotrimers

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Analysis and design of three-stranded coiled coils and three-helix bundles.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Sequence-based design of a peptide probe for the APC tumor suppressor protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A designed protein with packing between left-handed and right-handed helices

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

A distinct 14 residue site triggers coiled-coil formation in cortexillin I.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Effect of chain length on the formation and stability of synthetic alpha-helical coiled coils

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Dimerization specificity of the leucine zipper-containing bZIP motif on DNA binding: prediction and rational design

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

The role of position a in determining the stability and oligomerization state of alpha-helical coiled coils: 20 amino acid stability coefficients in the hydrophobic core of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Open-and-shut cases in coiled-coil assembly: alpha-sheets and alpha-cylinders

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Socket: a program for identifying and analysing coiled-coil motifs within protein structures.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Extended knobs-into-holes packing in classical and complex coiled-coil assemblies.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

GABA(A)-receptor-associated protein links GABA(A) receptors and the cytoskeleton

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Estimating the number of protein folds and families from complete genome data

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Core-directed protein design

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Predicting oligomerization states of coiled coils

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Designing supramolecular protein assemblies

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Fluorinated amino acids in protein design and engineering

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Helical supramolecules and fibers utilizing leucine zipper-displaying dendrimers

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

Rational design of a nanoscale helical scaffold derived from self-assembly of a dimeric coiled coil motif

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2805%2970004-8

7 January 2021

10.1016/S0065-3233(05)70004-8

Identifiers

DOI

1 reference

12 August 2017

1 reference

PubMed ID

15837514