DNA curvature and deformation in protein-DNA complexes: a step in the right direction (Q36085445)

12 August 2017

1 reference

title

DNA curvature and deformation in protein-DNA complexes: a step in the right direction (English)

1 reference

12 August 2017

Crothers DM

1

1 reference

PMCID

33930

12 August 2017

language of work or name

English

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publication date

1 December 1998

1 reference

Proceedings of the National Academy of Sciences of the United States of America

12 August 2017

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12 August 2017

95

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12 August 2017

26

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12 August 2017

15163-15165

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Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Measurement of the DNA bend angle induced by the catabolite activator protein using Monte Carlo simulation of cyclization kinetics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Characterization of the ATF/CREB site and its complex with GCN4.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

DNA-binding domains of Fos and Jun do not induce DNA curvature: an investigation with solution and gel methods

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

DNA targets for certain bZIP proteins distinguished by an intrinsic bend

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Structure of a B-DNA dodecamer: conformation and dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

CTG repeats associated with human genetic disease are inherently flexible

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Flexible DNA: genetically unstable CTG.CAG and CGG.CCG from human hereditary neuromuscular disease genes.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Determinants of repressor/operator recognition from the structure of the trp operator binding site.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Specific recognition nucleotides and their DNA context determine the affinity of E2 protein for 17 binding sites in the BPV-1 genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

DNA bending, flexibility, and helical repeat by cyclization kinetics.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

A theoretical method to predict DNA permutation gel electrophoresis from the sequence

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33930

Mechanism of the transition from fractal to dendritic growth of surface aggregates

11 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15163

DNA structure and flexibility in the sequence-specific binding of papillomavirus E2 proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15163

Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15163

The curvature vector in nucleosomal DNAs and theoretical prediction of nucleosome positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15163

B-DNA twisting correlates with base-pair morphology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15163

Sequence Elements Responsible for DNA Curvature

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15163

A computer graphics study of sequence-directed bending in DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15163

21 January 2018

Identifiers

DOI

10.1073/PNAS.95.26.15163

1 reference

12 August 2017

0 references

1 reference

12 August 2017

1 reference

PMCID

33930