Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study (Q36063067)

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Language	Label	Description	Also known as
English	Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study	scientific article

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scholarly article

1 reference

Europe PubMed Central

11 August 2017

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study (English)

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Europe PubMed Central

11 August 2017

Mycobacterium tuberculosis

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Agnieszka Broda

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Agnieszka Broda

3

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Adam P Giess

10

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Francis Drobniewski

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Francis Drobniewski

16

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Tanya Golubchik

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Tanya Golubchik

9

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Noel D McCarthy

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Noel D McCarthy

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Ibrahim Abubakar

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Ibrahim Abubakar

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Ann Sarah Walker

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A Sarah Walker

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Europe PubMed Central

11 August 2017

Derrick W Crook

24

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Derrick W Crook

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Europe PubMed Central

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25

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Tim E A Peto

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Europe PubMed Central

11 August 2017

Timothy M Walker

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object named as

Timothy M Walker

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Europe PubMed Central

11 August 2017

Katie J.M. Jeffery

12

object named as

Katie J Jeffery

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Europe PubMed Central

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2

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Maeve K Lalor

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Europe PubMed Central

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Carlos Del Ojo Elias

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object named as

Carlos Del Ojo Elias

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Europe PubMed Central

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Ian F Laurenson

14

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Ian F Laurenson

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Christopher P Conlon

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Christopher P Conlon

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Europe PubMed Central

11 August 2017

author name string

Luisa Saldana Ortega

4

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Europe PubMed Central

11 August 2017

Marcus Morgan

5

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11 August 2017

Lynne Parker

6

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Sheila Churchill

7

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11 August 2017

Karen Bennett

8

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11 August 2017

Ian C J W Bowler

13

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11 August 2017

Anne Barrett

15

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Laura F Anderson

18

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Europe PubMed Central

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H Lucy Thomas

20

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11 August 2017

Philip Monk

21

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E Grace Smith

22

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11 August 2017

publication date

4 March 2014

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11 August 2017

The Lancet. Respiratory medicine

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11 August 2017

2

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11 August 2017

285-292

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4

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11 August 2017

Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Evidence for a national problem: continued rise in tuberculosis case numbers in urban areas outside London.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Evaluation of Mycobacterium tuberculosis typing methods in a 4-year study in Schleswig-Holstein, Northern Germany

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Tuberculosis screening of migrants to low-burden nations: insights from evaluation of UK practice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

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2 October 2017

A systematic review and meta-analysis of molecular epidemiological studies of tuberculosis: development of a new tool to aid interpretation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

The epidemiology of tuberculosis in San Francisco. A population-based study using conventional and molecular methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

2 October 2017

Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis

1 reference

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2 October 2017

Whole genome sequencing analysis of intrapatient microevolution in Mycobacterium tuberculosis: potential impact on the inference of tuberculosis transmission.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

23 September 2018

Tuberculosis in the UK--time to regain control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

23 September 2018

The incubation period distribution of tuberculosis estimated with a molecular epidemiological approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

23 September 2018

Advanced survey of tuberculosis transmission in a complex socioepidemiologic scenario with a high proportion of cases in immigrants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4571080

23 September 2018

Identifiers

10.1016/S2213-2600(14)70027-X

1 reference

Europe PubMed Central

11 August 2017

1 reference

Europe PubMed Central

11 August 2017

1 reference

Europe PubMed Central

11 August 2017

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