Extensive allele-specific translational regulation in hybrid mice. (Q36036183)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26253569%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

title

Extensive allele-specific translational regulation in hybrid mice (English)

1 reference

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21 February 2020

2

1 reference

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21 February 2020

Erik McShane

3

1 reference

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21 February 2020

Wei Sun

5

1 reference

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21 February 2020

author name string

Jingyi Hou

1

1 reference

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21 February 2020

Henrik Zauber

4

1 reference

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21 February 2020

Matthias Selbach

6

1 reference

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21 February 2020

Wei Chen

7

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21 February 2020

publication date

7 August 2015

1 reference

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Molecular Systems Biology

21 February 2020

published in

1 reference

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21 February 2020

volume

11

1 reference

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21 February 2020

issue

8

1 reference

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21 February 2020

page(s)

825

1 reference

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Genomic variation. Impact of regulatory variation from RNA to protein

21 February 2020

cites work

1 reference

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2 October 2017

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mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues

2 October 2017

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Identification and validation of genetic variants that influence transcription factor and cell signaling protein levels.

2 October 2017

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FLEXBAR-Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms

2 October 2017

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2 October 2017

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Landscape and variation of RNA secondary structure across the human transcriptome

2 October 2017

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2 October 2017

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Transcriptome and genome sequencing uncovers functional variation in humans

2 October 2017

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A systematic evaluation of hybridization-based mouse exome capture system

2 October 2017

1 reference

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Deciphering the rules by which 5'-UTR sequences affect protein expression in yeast

2 October 2017

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Ultra-deep profiling of alternatively spliced Drosophila Dscam isoforms by circularization-assisted multi-segment sequencing

2 October 2017

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Rate-limiting steps in yeast protein translation

2 October 2017

1 reference

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Frac-seq reveals isoform-specific recruitment to polyribosomes

2 October 2017

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Variation and genetic control of protein abundance in humans

2 October 2017

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Positively charged residues are the major determinants of ribosomal velocity

2 October 2017

1 reference

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Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery.

2 October 2017

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Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells

2 October 2017

1 reference

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Genome-wide measurement of RNA folding energies

2 October 2017

1 reference

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Speeding with control: codon usage, tRNAs, and ribosomes

2 October 2017

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2 October 2017

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Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS.

2 October 2017

1 reference

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The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

2 October 2017

1 reference

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Balanced codon usage optimizes eukaryotic translational efficiency

2 October 2017

1 reference

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Fast gapped-read alignment with Bowtie 2

2 October 2017

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2 October 2017

ViennaRNA Package 2.0

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Mouse genomic variation and its effect on phenotypes and gene regulation

2 October 2017

1 reference

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MicroRNAs can generate thresholds in target gene expression

2 October 2017

1 reference

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AlleleSeq: analysis of allele-specific expression and binding in a network framework

2 October 2017

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Comparative analysis of proteome and transcriptome variation in mouse

2 October 2017

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Global quantification of mammalian gene expression control

2 October 2017

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The study of eQTL variations by RNA-seq: from SNPs to phenotypes

2 October 2017

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Synonymous but not the same: the causes and consequences of codon bias

2 October 2017

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Translational regulation of gene expression during conditions of cell stress

2 October 2017

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Genome-wide measurement of RNA secondary structure in yeast

2 October 2017

1 reference

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Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line

2 October 2017

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Mammalian microRNAs predominantly act to decrease target mRNA levels

2 October 2017

1 reference

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Regulation of mRNA translation and stability by microRNAs

2 October 2017

1 reference

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An evolutionarily conserved mechanism for controlling the efficiency of protein translation

2 October 2017

1 reference

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

2 October 2017

1 reference

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Identification of quantitative trait loci underlying proteome variation in human lymphoblastoid cells

2 October 2017

1 reference

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The mechanism of eukaryotic translation initiation and principles of its regulation

2 October 2017

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Global signatures of protein and mRNA expression levels

2 October 2017

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Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

2 October 2017

1 reference

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Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

2 October 2017

1 reference

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Coding-sequence determinants of gene expression in Escherichia coli

2 October 2017

1 reference

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Role of 3'UTRs in the translation of mRNAs regulated by oncogenic eIF4E--a computational inference

2 October 2017

1 reference

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Regulation of translation initiation in eukaryotes: mechanisms and biological targets

2 October 2017

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

2 October 2017

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MicroRNAs: target recognition and regulatory functions

2 October 2017

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

2 October 2017

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2 October 2017

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Widespread changes in protein synthesis induced by microRNAs

2 October 2017

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Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

2 October 2017

1 reference

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Trading translation with RNA-binding proteins

2 October 2017

1 reference

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Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT)

2 October 2017

1 reference

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Regulation of translation via mRNA structure in prokaryotes and eukaryotes

2 October 2017

1 reference

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The landscape of genetic complexity across 5,700 gene expression traits in yeast

2 October 2017

1 reference

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Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells

2 October 2017

1 reference

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Prediction of mammalian microRNA targets

2 October 2017

1 reference

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Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

2 October 2017

1 reference

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Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

2 October 2017

1 reference

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A somatic mutation in the 5'UTR of BRCA1 gene in sporadic breast cancer causes down-modulation of translation efficiency.

2 October 2017

1 reference

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Translational pathophysiology: a novel molecular mechanism of human disease

2 October 2017

1 reference

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Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes

2 October 2017

1 reference

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Identification of the iron-responsive element for the translational regulation of human ferritin mRNA

2 October 2017

1 reference

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Characterization and evolution of the expressed rat ferritin light subunit gene and its pseudogene family. Conservation of sequences within noncoding regions of ferritin genes

2 October 2017

1 reference

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Multiple upstream AUG codons mediate translational control of GCN4.

2 October 2017

1 reference

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An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs

2 October 2017

1 reference

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Codon optimality is a major determinant of mRNA stability

2 October 2017

1 reference

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Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast.

11 July 2018

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Evolution at two levels of gene expression in yeast

11 July 2018

1 reference

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In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

11 July 2018

1 reference

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Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

23 September 2018

1 reference

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Translational control via protein-regulated upstream open reading frames.

23 September 2018

1 reference

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Regulatory mutations in transforming growth factor-beta3 gene cause arrhythmogenic right ventricular cardiomyopathy type 1

23 September 2018

1 reference

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Bioinformatic analysis of post-transcriptional regulation by uORF in human and mouse

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26253569

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.15252/MSB.156240

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26253569%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26253569%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26253569%20AND%20SRC:MED&resulttype=core&format=json