Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus (Q35957928)

11 August 2017

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus (English)

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11 August 2017

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57

Eric S Lander

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B. Jesse Shapiro

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B Jesse Shapiro

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58

Stephan Günther

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Nisha Broodie

Nisha Broodie

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Luis Branco

Luis M Branco

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Danny Milner

Danny A Milner

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Pardis C. Sabeti

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Pardis C Sabeti

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Robert F. Garry

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Robert F Garry

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Christian T Happi

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Mambu Momoh

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Kristian G Andersen

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Stephen F Schaffner

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Amanda K Lukens

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Lisa Hensley

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Augustine Goba

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Andreas Gnirke

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Christian B Matranga

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John S Schieffelin

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Sarah Winnicki

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Joseph B McCormick

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Daniel G Bausch

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Peter O Okokhere

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Danny A Asogun

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Lansana Kanneh

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Aaron E Lin

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Lina M Moses

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Matthew Stremlau

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Bruce Birren

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Danielle Levy

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Mohammed Fullah

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Mbalu Fonnie

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Richard Fonnie

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Stephen K Gire

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Shervin Tabrizi

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Ridhi Tariyal

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Onikepe A Folarin

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S Humarr Khan

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Michael Gbakie

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Rachel Sealfon

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Simbirie Jalloh

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Sidiki Saffa

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Viral Hemorrhagic Fever Consortium

11 August 2017

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Viral Hemorrhagic Fever Consortium

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11 August 2017

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Sylvanus Okogbenin

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11 August 2017

Ikponmwonsa Odia

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11 August 2017

Philomena E Ehiane

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11 August 2017

Eleina M England

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Eric Phelan

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Ryan Tewhey

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11 August 2017

Omowunmi Omoniwa

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11 August 2017

Kandeh Karbo

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11 August 2017

Adrianne D Gladden

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11 August 2017

James Qu

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11 August 2017

Mahan Nekoui

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11 August 2017

Hilary K Finucane

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11 August 2017

Joseph J Vitti

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11 August 2017

Michael Fitzgerald

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11 August 2017

Caryn McCowan

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11 August 2017

Andrea Ireland

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11 August 2017

Aaron M Berlin

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11 August 2017

James Bochicchio

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11 August 2017

Barbara Tazon-Vega

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11 August 2017

Niall J Lennon

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11 August 2017

Elizabeth M Ryan

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11 August 2017

Zach Bjornson

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11 August 2017

Megan Rowland

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11 August 2017

Megan Heinrich

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11 August 2017

Marjan Akdag

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11 August 2017

Henry Akpan

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11 August 2017

Kathleen Rubins

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11 August 2017

Donald S Grant

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George O Akpede

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11 August 2017

Joshua Z Levin

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11 August 2017

language of work or name

English

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publication date

1 August 2015

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11 August 2017

13

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published in

Cell

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11 August 2017

162

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11 August 2017

738-750

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11 August 2017

4

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Widespread recombination, reassortment, and transmission of unbalanced compound viral genotypes in natural arenavirus infections

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Using modelling to disentangle the relative contributions of zoonotic and anthroponotic transmission: the case of lassa fever

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Strategies for containing Ebola in West Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Phylogenetic Analysis of Guinea 2014 EBOV Ebolavirus Outbreak

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Emergence of Zaire Ebola Virus Disease in Guinea

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Lassa fever in post-conflict sierra leone

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genome-wide analysis of codon usage and influencing factors in chikungunya viruses

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

A case for the ancient origin of coronaviruses

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The changing face of pathogen discovery and surveillance

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Molecular evolution of viruses of the family Filoviridae based on 97 whole-genome sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Epidemiology. Emerging disease or diagnosis?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Pathogenesis of the viral hemorrhagic fevers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genome-wide patterns of intrahuman dengue virus diversity reveal associations with viral phylogenetic clade and interhost diversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The impact of human conflict on the genetics of Mastomys natalensis and Lassa virus in West Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Bayesian phylogenetics with BEAUti and the BEAST 1.7

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genome-wide scans provide evidence for positive selection of genes implicated in Lassa fever

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Purifying selection can obscure the ancient age of viral lineages

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The genomic rate of molecular adaptation of the human influenza A virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Synonymous but not the same: the causes and consequences of codon bias

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Filoviruses are ancient and integrated into mammalian genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Looking for Darwin's footprints in the microbial world

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Early and strong immune responses are associated with control of viral replication and recovery in lassa virus-infected cynomolgus monkeys

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Risk maps of Lassa fever in West Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

2 October 2017

Selection on Codon Bias

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Predicting linear B-cell epitopes using string kernels

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

BEAST: Bayesian evolutionary analysis by sampling trees

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The quest for natural selection in the age of comparative genomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Mastomys natalensis and Lassa fever, West Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Comparisons of dN/dS are time dependent for closely related bacterial genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Sequence analysis of L RNA of Lassa virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Evidence for diversifying selection on erythrocyte-binding antigens of Plasmodium falciparum and P. vivax

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genetic diversity among Lassa virus strains

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Completion of the Lassa fever virus sequence and identification of a RING finger open reading frame at the L RNA 5' End.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

An outbreak of Lassa fever on the Jos plateau, Nigeria, in January-February 1970. A preliminary report

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Lassa fever, a new virus disease of man from West Africa. I. Clinical description and pathological findings

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Lassa fever. Effective therapy with ribavirin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Adaptive protein evolution at the Adh locus in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Ebola haemorrhagic fever in Zaire, 1976

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The excess of transitions among nucleotide substitutions: new methods of estimating transition bias underscore its significance.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Generation of reassortants between African arenaviruses

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

24 September 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/26276630

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2015.07.020

1 reference

11 August 2017

1 reference

11 August 2017

1 reference