Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications (Q35925603)

11 August 2017

Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications (English)

1 reference

11 August 2017

Mycobacterium abscessus

1 reference

9

Christiane Bouchier

0 references

Joon Liang Tan

Joon Liang Tan

15

0 references

Mathias Vandenbogaert

Mathias Vandenbogaert

11

0 references

Yun Fong Ngeow

Yun Fong Ngeow

14

0 references

Jean-Louis Herrmann

Jean-Louis Herrmann

16

0 references

Roland Brosch

Roland Brosch

8

0 references

Thierry Wirth

Thierry Wirth

19

0 references

Sylvain Brisse

10

Sylvain Brisse

1 reference

11 August 2017

12

Jean-Michel Thiberge

1 reference

11 August 2017

3

Mickael Orgeur

1 reference

11 August 2017

13

Valérie Caro

1 reference

11 August 2017

2

Julie Konjek

1 reference

11 August 2017

6

Anne-Laure Roux

1 reference

11 August 2017

18

Beate Heym

1 reference

11 August 2017

Guillaume Sapriel

1

1 reference

11 August 2017

Laurent Bouri

4

1 reference

11 August 2017

Lise Frézal

5

1 reference

11 August 2017

Emilie Dumas

7

1 reference

11 August 2017

Jean-Louis Gaillard

17

1 reference

11 August 2017

language of work or name

English

0 references

publication date

17 February 2016

1 reference

11 August 2017

1 reference

11 August 2017

17

1 reference

11 August 2017

118

1 reference

describes a project that uses

11 August 2017

MUMmer

MUMMER

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Complete genome sequence and comparative genomic analysis of Mycobacterium massiliense JCM 15300 in the Mycobacterium abscessus group reveal a conserved genomic island MmGI-1 related to putative lipid metabolism

2 October 2017

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Identification of a novel conjugative plasmid in mycobacteria that requires both type IV and type VII secretion

2 October 2017

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Genomic signatures of distributive conjugal transfer among mycobacteria

2 October 2017

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Genome analysis reveals three genomospecies in Mycobacterium abscessus

2 October 2017

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Lack of antimicrobial bactericidal activity in Mycobacterium abscessus.

2 October 2017

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Genomic reconnaissance of clinical isolates of emerging human pathogen Mycobacterium abscessus reveals high evolutionary potential.

2 October 2017

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Recent trends in clinically significant nontuberculous Mycobacteria isolates at a Korean general hospital

2 October 2017

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A phylogenomic approach to bacterial subspecies classification: proof of concept in Mycobacterium abscessus.

2 October 2017

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Nontuberculous mycobacteria: the changing epidemiology and treatment challenges in cystic fibrosis.

2 October 2017

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Distributive conjugal transfer in mycobacteria generates progeny with meiotic-like genome-wide mosaicism, allowing mapping of a mating identity locus

2 October 2017

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2 October 2017

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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

2 October 2017

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Clinical and microbiological differences between Mycobacterium abscessus and Mycobacterium massiliense lung diseases.

2 October 2017

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After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection

2 October 2017

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Mycobacterium abscessus: a new antibiotic nightmare

2 October 2017

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Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

2 October 2017

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Rapid growing mycobacteria and TNF-α blockers: case report of a fatal lung infection with Mycobacterium abscessus in a patient treated with infliximab, and literature review.

2 October 2017

1 reference

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The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation

2 October 2017

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Nontuberculous mycobacteria in respiratory tract infections, eastern Asia

2 October 2017

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Multilocus sequence analysis and rpoB sequencing of Mycobacterium abscessus (sensu lato) strains

2 October 2017

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Clinical outcome of Mycobacterium abscessus infection and antimicrobial susceptibility testing

2 October 2017

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Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description [...]

2 October 2017

1 reference

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genoPlotR: comparative gene and genome visualization in R

2 October 2017

1 reference

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Chronic Mycobacterium abscessus infection and lung function decline in cystic fibrosis

2 October 2017

1 reference

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Mycobacterium abscessus: a new player in the mycobacterial field

2 October 2017

1 reference

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Multicenter study of prevalence of nontuberculous mycobacteria in patients with cystic fibrosis in france

2 October 2017

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Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus

2 October 2017

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2 October 2017

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Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii.

2 October 2017

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A novel gene, erm(41), confers inducible macrolide resistance to clinical isolates of Mycobacterium abscessus but is absent from Mycobacterium chelonae

2 October 2017

1 reference

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ESX/type VII secretion systems and their role in host-pathogen interaction

2 October 2017

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Proportions of Mycobacterium massiliense and Mycobacterium bolletii strains among Korean Mycobacterium chelonae-Mycobacterium abscessus group isolates

2 October 2017

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

2 October 2017

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2 October 2017

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The rise and spread of a new pathogen: seroresistant Moraxella catarrhalis

2 October 2017

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An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases

2 October 2017

1 reference

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Sex and virulence in Escherichia coli: an evolutionary perspective

2 October 2017

1 reference

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M-Coffee: combining multiple sequence alignment methods with T-Coffee

2 October 2017

1 reference

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A simple and robust statistical test for detecting the presence of recombination

2 October 2017

1 reference

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Application of phylogenetic networks in evolutionary studies

2 October 2017

1 reference

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Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis

2 October 2017

1 reference

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2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: lessons from Ladakh

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Versatile and open software for comparing large genomes

2 October 2017

1 reference

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Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

2 October 2017

1 reference

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Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Traces of human migrations in Helicobacter pylori populations

2 October 2017

1 reference

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An index of substitution saturation and its application

2 October 2017

1 reference

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TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

A coalescent-based method for detecting and estimating recombination from gene sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Fatal pulmonary infection due to multidrug-resistant Mycobacterium abscessus in a patient with cystic fibrosis

2 October 2017

1 reference

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MODELTEST: testing the model of DNA substitution

2 October 2017

1 reference

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Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms

2 October 2017

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Recent progress towards understanding genetic variation in the Mycobacterium abscessus complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Characterization of rough and smooth morphotypes of Mycobacterium abscessus isolates from clinical specimens

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Genomic analysis of Mycobacterium abscessus strain M139, which has an ambiguous subspecies taxonomic position

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

The specialized secretory apparatus ESX-1 is essential for DNA transfer in Mycobacterium smegmatis.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

The cystic fibrosis lung microbiome

11 July 2018

1 reference

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AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Clinical and microbiologic outcomes in patients receiving treatment for Mycobacterium abscessus pulmonary disease.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Mycobacterium massiliense is differentiated from Mycobacterium abscessus and Mycobacterium bolletii by erythromycin ribosome methyltransferase gene (erm) and clarithromycin susceptibility patterns

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Characterization of mycobacteria from a major Brazilian outbreak suggests that revision of the taxonomic status of members of the Mycobacterium chelonae-M. abscessus group is needed

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Inaccuracy of single-target sequencing for discriminating species of the Mycobacterium abscessus group

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Hypervirulence of a rough variant of the Mycobacterium abscessus type strain

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Chromosomal DNA transfer in Mycobacterium smegmatis is mechanistically different from classical Hfr chromosomal DNA transfer.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Unconventional conjugal DNA transfer in mycobacteria.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Emergence of nontuberculous mycobacteria as pathogens in cystic fibrosis.

24 September 2018

1 reference

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Nontuberculous mycobacteria. I: multicenter prevalence study in cystic fibrosis.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Horizontal Transfer of a Virulence Operon to the Ancestor of Mycobacterium tuberculosis

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-016-2448-1

Outcomes in patients with Mycobacterium abscessus pulmonary disease treated with long-term injectable drugs

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4756508

Clinical significance of differentiation of Mycobacterium massiliense from Mycobacterium abscessus

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26884275

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26884275

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-016-2448-1

1 reference

11 August 2017

1 reference

11 August 2017

1 reference